FC872950

Overview
NameFC872950
Unique NameFC872950
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1284 contig Ccv1_Contig1284:1..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULIA (50S ribosomal protein L7Ae OS=Sulfolobus islandicus (strain M.16.27) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.204e-11
Identity = 36/102 (35.29%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L VIA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVVIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_SULSO (50S ribosomal protein L7Ae OS=Sulfolobus solfataricus GN=rpl7ae PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 35/102 (34.31%), Postives = 56/102 (54.90%), Query Frame = 3
Query:  117 VSLAPIAKPLAGKKLSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVL 422
            +S A   K    + L+   L  VR A E   +K+G  E  K++ RG   L +IA ++ P +++ H+P+LC+E  IPY+YV+SK+ L  A   +  T    +L
Sbjct:    1 MSKASYVKFEVPQDLADKVLEAVRKAKESGKIKKGTNETTKAVERGQAKLVIIAEDVQPEEIVAHLPLLCDEKKIPYVYVSSKKALGEACGLQVATASAAIL 102          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_ARCFU (50S ribosomal protein L7Ae OS=Archaeoglobus fulgidus GN=rpl7ae PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.879e-11
Identity = 34/94 (36.17%), Postives = 53/94 (56.38%), Query Frame = 3
Query:  174 LGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLANAGATKRPTCCVLVLTKPTKGELGQE 455
            L L+    E   +K+G  E  K++ RG   L  IA ++ P +++ H+P+LCEE ++PYIYV SK DL  A   + P     ++    +GEL +E
Sbjct:   16 LSLLEKVRESGKVKKGTNETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLGRAVGIEVPCASAAII---NEGELRKE 106          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PYRCJ (50S ribosomal protein L7Ae OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl7Ae PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.910e-11
Identity = 38/115 (33.04%), Postives = 60/115 (52.17%), Query Frame = 3
Query:  135 AKPLAGKK----------LSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDLAN-AGATKRPTCCVLVLTKPTKGEL 446
            A PL GK           +++  L ++ +A +   +K+G  E  K++ RG   L +IA ++ P +V+ H+P+LCEE  +PY+YV SKE L   AG        V++      GEL
Sbjct:   12 ANPLPGKPFYVRFEVPSDVAEKALEILSIARQTGKIKKGTNETTKAVERGLAKLVLIAEDVDPPEVVAHLPLLCEEKKVPYVYVPSKEKLGKAAGINVAAAAAVVIEAGQAAGEL 126          
BLAST of FC872950 vs. ExPASy Swiss-Prot
Match: RL7A_PICTO (50S ribosomal protein L7Ae OS=Picrophilus torridus GN=rpl7ae PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.376e-11
Identity = 32/72 (44.44%), Postives = 46/72 (63.89%), Query Frame = 3
Query:  159 LSKGTLGLVRLAAEHKCLKRGVKEVVKSIRRGHKGLCVIAGNISPIDVITHVPILCEESDIPYIYVASKEDL 374
            L K  L +V  + +   +++G  EVVKSI RG   L VIA ++SP +V+ ++P LCEE  +PY+YV  K DL
Sbjct:   13 LEKAVLDMVENSYKTGKVRKGTNEVVKSIERGESKLVVIAEDVSPAEVVYYLPTLCEERKVPYVYVKKKSDL 84          
The following BLAST results are available for this feature:
BLAST of FC872950 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
RL7A_SULIA2.204e-1135.2950S ribosomal protein L7Ae OS=Sulfolobus islandicu... [more]
RL7A_SULSO2.879e-1134.3150S ribosomal protein L7Ae OS=Sulfolobus solfatari... [more]
RL7A_ARCFU2.879e-1136.1750S ribosomal protein L7Ae OS=Archaeoglobus fulgid... [more]
RL7A_PYRCJ4.910e-1133.0450S ribosomal protein L7Ae OS=Pyrobaculum calidifo... [more]
RL7A_PICTO8.376e-1144.4450S ribosomal protein L7Ae OS=Picrophilus torridus... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG01FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872950 ID=FC872950; Name=FC872950; organism=Citrus clementina; type=EST; length=700bp
TGAAAAATAAAACTCAAATCTCTGTTTCGTGCGATTCATTGATAACTGAA
CAAATAAAATGGGAAGCGACAGCTTAACCAGAGAGAACCCCTCATAAATA
TGAGAAGAAGAACATTGTTAGTCTTGCTCCCATTGCTAAGCCTCTAGCTG
GAAAGAAGCTCTCCAAAGGAACCCTCGGGCTTGTCCGTCTAGCTGCTGAG
CACAAATGCTTGAAGAGAGGAGTGAAGGAAGTGGTCAAAAGTATCCGCCG
TGGTCATAAAGGATTATGTGTTATAGCTGGGAACATTAGTCCAATTGATG
TCATCACTCACGTTCCTATCTTATGTGAAGAGTCTGATATTCCCTACATT
TATGTTGCTTCAAAAGAGGATCTTGCAAATGCAGGTGCCACAAAGAGGCC
AACATGCTGTGTTTTGGTGCTAACTAAGCCAACTAAGGGAGAACTAGGAC
AAGAGGAACAAGATAAGTTGAAAGCTGATTATACCCTCGTTGTAGAGGAT
GTGAAGGAACTGGCATCCTCTCTTTTCTGATGAACTAGACTTAAAGCCAA
CAAAGATGATTGTGCTTACAGATATGTTTGATTTCGAACCTTCCCTTTCT
AGCTGAGTAATGTACTCTAGTTTTGTCGAATGTAAAATGCAGTTTGCCTC
TGTTGCATGAGATGGTTGGTTTTCATGTCTCATATGTGGGTATATTGCTT
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