FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_HELAN (Glutathione peroxidase 1 OS=Helianthus annuus GN=GPXHA-1 PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 4.684e-45
Identity = 80/118 (67.80%), Postives = 99/118 (83.90%), Query Frame = 2
Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            ++K+LYDFTVKD  G DV LS +KGKV+LIVNVAS+CGLT ++Y EL+ +Y KYK +GFEILAFPCNQFG QEPG+N EI +F CT+FK+EFPIFDK+DVNG N APVY+ LK+  +G
Sbjct:    5 SKKTLYDFTVKDAKGNDVDLSVYKGKVVLIVNVASKCGLTNNSYDELNQIYLKYKEKGFEILAFPCNQFGQQEPGTNEEIVDFVCTKFKSEFPIFDKIDVNGENAAPVYEFLKTGFYG 122          

HSP 2 Score: 26.5646 bits (57), Expect = 4.684e-45
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  627 GILGDLVKWNFEKFL 671
            GILG  ++WNF KFL
Sbjct:  122 GILGGDIQWNFSKFL 136          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX4_HELAN (Probable phospholipid hydroperoxide glutathione peroxidase OS=Helianthus annuus GN=GPXHA-2 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 1.035e-44
Identity = 79/111 (71.17%), Postives = 92/111 (82.88%), Query Frame = 2
Query:  296 FTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            F+ KD+ G+DV LSK+KGKVLLIVNVAS+CG T SNY EL+ LY+KYK QGFEILAFPCNQFGGQEPGSN EI+ FACTRFKAE+P+F KV+VNG    P+Y+ LKS   G
Sbjct:   25 FSDKDVKGQDVELSKYKGKVLLIVNVASQCGFTNSNYPELTTLYQKYKDQGFEILAFPCNQFGGQEPGSNEEIQVFACTRFKAEYPVFSKVNVNGKEADPLYKFLKSSKGG 135          

HSP 2 Score: 33.113 bits (74), Expect = 1.035e-44
Identity = 13/18 (72.22%), Postives = 14/18 (77.78%), Query Frame = 3
Query:  618 SAGGILGDLVKWNFEKFL 671
            S GG LGD +KWNF KFL
Sbjct:  132 SKGGFLGDSIKWNFTKFL 149          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_ARATH (Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.171e-44
Identity = 84/116 (72.41%), Postives = 98/116 (84.48%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            KS+YDFTVKDI G DV L ++KGK LL+VNVAS+CGLT +NY EL+ LYEKYK QG EILAFPCNQF GQEPG+N EI++  CTRFKAEFPIFDKVDVNG NTAP+Y+ LK++  G
Sbjct:    7 KSIYDFTVKDIGGNDVSLDQYKGKTLLVVNVASKCGLTDANYKELNVLYEKYKEQGLEILAFPCNQFLGQEPGNNEEIQQTVCTRFKAEFPIFDKVDVNGKNTAPLYKYLKAEKGG 122          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX4_MESCR (Probable phospholipid hydroperoxide glutathione peroxidase OS=Mesembryanthemum crystallinum GN=GPXMC1 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.409e-44
Identity = 87/118 (73.73%), Postives = 96/118 (81.36%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNF 634
            KS++DF VKD  G DV LS +KGKVLLIVNVAS+CGLT SNY EL+ LYE+YK +G EILAFPCNQFG QEPG N +I EFACTRFKAEFPIFDKVDVNG N APVY+ LKS   G F
Sbjct:   10 KSIHDFIVKDARGNDVDLSIYKGKVLLIVNVASQCGLTNSNYPELTKLYEQYKDKGLEILAFPCNQFGNQEPGDNEQIMEFACTRFKAEFPIFDKVDVNGSNAAPVYKYLKSSKGGLF 127          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_ARATH (Probable glutathione peroxidase 3, mitochondrial OS=Arabidopsis thaliana GN=GPX3 PE=1 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.064e-44
Identity = 86/135 (63.70%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  230 FFVKRRSFGAHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNF 634
            F++ R          +  S+Y+ +VKDI+GKDV LSKF GKVLLIVNVAS+CGLT  NY E++ LY KYKTQGFEILAFPCNQFG QEPGSN EIKE  C  FKAEFPIFDK++VNG NT P+Y  LK +  G F
Sbjct:   29 FYLYRYPSSPSTVEQSSTSIYNISVKDIEGKDVSLSKFTGKVLLIVNVASKCGLTHGNYKEMNILYAKYKTQGFEILAFPCNQFGSQEPGSNMEIKETVCNIFKAEFPIFDKIEVNGKNTCPLYNFLKEQKGGLF 163          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX5_ARATH (Probable glutathione peroxidase 5 OS=Arabidopsis thaliana GN=GPX5 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.217e-42
Identity = 76/119 (63.87%), Postives = 97/119 (81.51%), Query Frame = 2
Query:  263 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            +++ +EKS++ FTVKD  GK+V LS ++GKVLL+VNVAS+CG T SNY++L+ LY KYK QGF +LAFPCNQF  QEPG++ E  +FACTRFKAE+P+F KV VNG N APVY+ LKSK
Sbjct:    6 SSSVSEKSIHQFTVKDSSGKEVDLSVYQGKVLLVVNVASKCGFTESNYTQLTELYRKYKDQGFVVLAFPCNQFLSQEPGTSEEAHQFACTRFKAEYPVFQKVRVNGQNAAPVYKFLKSK 124          

HSP 2 Score: 26.5646 bits (57), Expect = 1.217e-42
Identity = 10/15 (66.67%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  633 LGDLVKWNFEKFLSG 677
            LG  +KWNF KFL G
Sbjct:  129 LGSRIKWNFTKFLVG 143          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_ARATH (Probable glutathione peroxidase 8 OS=Arabidopsis thaliana GN=GPX8 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 6.458e-41
Identity = 69/118 (58.47%), Postives = 96/118 (81.36%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNF 634
            +S+Y+ +++D  G ++ LS++K KVLLIVNVAS+CG+T SNY+EL+ LY +YK +G EILAFPCNQFG +EPG+N +I +F CTRFK+EFPIF+K++VNG N +P+Y+ LK   WG F
Sbjct:    7 ESVYELSIEDAKGNNLALSQYKDKVLLIVNVASKCGMTNSNYTELNELYNRYKDKGLEILAFPCNQFGDEEPGTNDQITDFVCTRFKSEFPIFNKIEVNGENASPLYKFLKKGKWGIF 124          

HSP 2 Score: 27.335 bits (59), Expect = 6.458e-41
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  627 GILGDLVKWNFEKFL 671
            GI GD ++WNF KFL
Sbjct:  122 GIFGDDIQWNFAKFL 136          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX4_ARATH (Probable glutathione peroxidase 4 OS=Arabidopsis thaliana GN=GPX4 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.290e-37
Identity = 72/118 (61.02%), Postives = 93/118 (78.81%), Query Frame = 2
Query:  263 ATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKS 616
            + +  E+S++ FTVKD  GKD+ +S ++GKVLLIVNVAS+CG T +NY++L+ LY KYK Q FEILAFPCNQF  QEPG++ E  EFAC RFKAE+P+F KV VNG N AP+Y+ LK+
Sbjct:    4 SASVPERSVHQFTVKDSSGKDLNMSIYQGKVLLIVNVASKCGFTETNYTQLTELYRKYKDQDFEILAFPCNQFLYQEPGTSQEAHEFACERFKAEYPVFQKVRVNGQNAAPIYKFLKA 121          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_CAEEL (Probable glutathione peroxidase R05H10.5 OS=Caenorhabditis elegans GN=R05H10.5 PE=2 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.032e-34
Identity = 63/115 (54.78%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            S++  TVK+  G+D PLS ++GKVL+IVNVAS+CGLT SNY++   L + YK  G E+LAFPCNQFGGQEP    +I  F   +FK E  +F K+DVNG NTAP+Y+ LK +  G
Sbjct:    3 SVHGITVKNAQGEDTPLSNYQGKVLIIVNVASQCGLTNSNYNQFKELLDVYKKDGLEVLAFPCNQFGGQEPSCEIDIAAFVADKFKFEPTLFQKIDVNGDNTAPLYKFLKQEKGG 117          

HSP 2 Score: 30.4166 bits (67), Expect = 1.032e-34
Identity = 12/18 (66.67%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  624 GGILGDLVKWNFEKFLSG 677
            GG L D +KWNF KFL G
Sbjct:  116 GGFLVDAIKWNFTKFLVG 133          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_CAEEL (Probable glutathione peroxidase F26E4.12 OS=Caenorhabditis elegans GN=F26E4.12 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.204e-33
Identity = 61/115 (53.04%), Postives = 82/115 (71.30%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            S+YDF VK+ +G DV LS +KGKVL+IVNVAS+CGLT  NY++L  L + YK  G E+LAFPCNQF GQEP    +I+ F   +FK E  +F K+DVNG   +P+++ LK++  G
Sbjct:    3 SVYDFNVKNANGDDVSLSDYKGKVLIIVNVASQCGLTNKNYTQLKELLDVYKKDGLEVLAFPCNQFAGQEPSCEIDIQAFVADKFKFEPTLFQKIDVNGDKQSPLFKFLKNEKGG 117          

HSP 2 Score: 29.6462 bits (65), Expect = 3.204e-33
Identity = 11/18 (61.11%), Postives = 13/18 (72.22%), Query Frame = 3
Query:  624 GGILGDLVKWNFEKFLSG 677
            GG + D +KWNF KFL G
Sbjct:  116 GGFMFDAIKWNFTKFLVG 133          
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_HELAN4.684e-4567.80Glutathione peroxidase 1 OS=Helianthus annuus GN=G... [more]
GPX4_HELAN1.035e-4471.17Probable phospholipid hydroperoxide glutathione pe... [more]
GPX2_ARATH3.171e-4472.41Probable glutathione peroxidase 2 OS=Arabidopsis t... [more]
GPX4_MESCR5.409e-4473.73Probable phospholipid hydroperoxide glutathione pe... [more]
GPX3_ARATH7.064e-4463.70Probable glutathione peroxidase 3, mitochondrial O... [more]
GPX5_ARATH1.217e-4263.87Probable glutathione peroxidase 5 OS=Arabidopsis t... [more]
GPX8_ARATH6.458e-4158.47Probable glutathione peroxidase 8 OS=Arabidopsis t... [more]
GPX4_ARATH1.290e-3761.02Probable glutathione peroxidase 4 OS=Arabidopsis t... [more]
GPX2_CAEEL1.032e-3454.78Probable glutathione peroxidase R05H10.5 OS=Caenor... [more]
GPX1_CAEEL3.204e-3353.04Probable glutathione peroxidase F26E4.12 OS=Caenor... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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