FC872958 | Citrus Genome Database

Overview


Name	FC872958
Unique Name	FC872958
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	678

Libraries


Library Name	Type
AbsDev	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig1062	contig	Ccv1_Contig1062:60..736.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPXC_BRUMA (Cuticular glutathione peroxidase OS=Brugia malayi PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.877e-15
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2

Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+ LK +C
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERC 159

HSP 2 Score: 21.557 bits (44), Expect = 2.877e-15
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3

Query:  645 VKWNFEKFL 671
            V WNFEKFL
Sbjct:  182 VIWNFEKFL 190

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_PONPY (Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.887e-15
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI          + ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGSGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 4.887e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_MACFU (Glutathione peroxidase 2 OS=Macaca fuscata fuscata GN=GPX2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.887e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 4.887e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_HYLLA (Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.887e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 4.887e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_HUMAN (Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 4.887e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 4.887e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_CEBAP (Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 PE=2 SV=2)

HSP 1 Score: 76.2554 bits (186), Expect = 4.887e-15
Identity = 44/118 (37.29%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 4.887e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_CALJA (Glutathione peroxidase 2 OS=Callithrix jacchus GN=GPX2 PE=2 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 1.811e-14
Identity = 43/118 (36.44%), Postives = 65/118 (55.08%), Query Frame = 2

Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ V  + F+G+ +LI NVAS  G T  ++++L+ L  ++  +   +L FPC+QFG QE   N EI       R    ++  F +  K +VNG N  PV+  LK K
Sbjct:    6 KSFYDLSAISLDGEKVDFNTFRGRAVLIENVASLUGTTTRDFTQLNELQCRFPRR-LVVLGFPCHQFGHQENCQNEEILNSLKYVRPGGGYQPTFTLVQKCEVNGQNEHPVFAYLKDK 122

HSP 2 Score: 23.8682 bits (50), Expect = 1.811e-14
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VAWNFEKFLIG 160

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPXC_WUCBA (Cuticular glutathione peroxidase OS=Wuchereria bancrofti PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 8.661e-14
Identity = 43/123 (34.96%), Postives = 64/123 (52.03%), Query Frame = 2

Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            T +++YDF  + ++G    L++++ KVLLIVNVA+ C  T   Y + + +          IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+ LK +C
Sbjct:   38 TNQTVYDFHAQMLNGAQRSLTEYRNKVLLIVNVATYCAYT-MQYRDFNPILGSNSNGTLNILGFPCNQFYLQEPAENHELLNGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERC 159

HSP 2 Score: 21.557 bits (44), Expect = 8.661e-14
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3

Query:  645 VKWNFEKFL 671
            V WNFEKFL
Sbjct:  182 VIWNFEKFL 190

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_CEBAP (Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.622e-11
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 2

Query:  257 AHATAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            A   AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++  L+
Sbjct:    4 AGLAAAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLR 128

HSP 2 Score: 23.8682 bits (50), Expect = 1.622e-11
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  158 VAWNFEKFLVG 168

BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_CALJA (Glutathione peroxidase 1 OS=Callithrix jacchus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 1.622e-11
Identity = 41/125 (32.80%), Postives = 63/125 (50.40%), Query Frame = 2

Query:  257 AHATAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            A   AA  +S+Y F+ + +  G+ V L   + K LLI NVAS  G T  +Y++++    +   +G  +L FPCN  G QE   N EI       R    F+  F +F+K +VNG     ++  L+
Sbjct:    4 AGLAAAAAQSVYAFSARQLAGGEPVSLGSLRCKGLLIENVASLUGTTVRDYTQMNEPQRRLGPRGLVVLGFPCNHSGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKGEVNGAGAHTLFAFLR 128

HSP 2 Score: 23.8682 bits (50), Expect = 1.622e-11
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3

Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  158 VAWNFEKFLVG 168

The following BLAST results are available for this feature:

BLAST of FC872958 vs. ExPASy Swiss-Prot

BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110


Match Name	E-value	Identity	Description
GPXC_BRUMA	2.877e-15	36.59	Cuticular glutathione peroxidase OS=Brugia malayi ...	[more]
GPX2_PONPY	4.887e-15	36.44	Glutathione peroxidase 2 OS=Pongo pygmaeus GN=GPX2...	[more]
GPX2_MACFU	4.887e-15	37.29	Glutathione peroxidase 2 OS=Macaca fuscata fuscata...	[more]
GPX2_HYLLA	4.887e-15	37.29	Glutathione peroxidase 2 OS=Hylobates lar GN=GPX2 ...	[more]
GPX2_HUMAN	4.887e-15	37.29	Glutathione peroxidase 2 OS=Homo sapiens GN=GPX2 P...	[more]
GPX2_CEBAP	4.887e-15	37.29	Glutathione peroxidase 2 OS=Cebus apella GN=GPX2 P...	[more]
GPX2_CALJA	1.811e-14	36.44	Glutathione peroxidase 2 OS=Callithrix jacchus GN=...	[more]
GPXC_WUCBA	8.661e-14	34.96	Cuticular glutathione peroxidase OS=Wuchereria ban...	[more]
GPX1_CEBAP	1.622e-11	32.80	Glutathione peroxidase 1 OS=Cebus apella GN=GPX1 P...	[more]
GPX1_CALJA	1.622e-11	32.80	Glutathione peroxidase 1 OS=Callithrix jacchus GN=...	[more]

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Properties


Property Name	Value
Genbank description	KN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC