FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAR (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain MRSA252) GN=bsaA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAN (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain N315) GN=bsaA PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAM (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=bsaA PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAAC (Glutathione peroxidase homolog bsaA OS=Staphylococcus aureus (strain COL) GN=bsaA PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.385e-23
Identity = 58/132 (43.94%), Postives = 75/132 (56.82%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNFRRPCQVEL*EVLKW 676
            +++YDF V+   G    L  +KG V+LIVN AS CG T S +  L  LYEKYK QGF IL FPCNQFGGQEPGS  E  +     +   FP+  K+DV G +  P+++ L +   G F         E +KW
Sbjct:    2 ETIYDFVVETNKGVTYKLDAYKGDVMLIVNTASECGFT-SQFEGLQSLYEKYKDQGFVILGFPCNQFGGQEPGSGEEAAQNCKLNYGVTFPMHQKIDVKGEHQLPLFRYLTAAQHGFFN--------EKIKW 124          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX7_MOUSE (Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.363e-23
Identity = 54/118 (45.76%), Postives = 68/118 (57.63%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            A A A +E+  YDF   +I GK V L K++G V L+VNVAS CG T  NY  L  L        F +LAFPCNQFG QEP +N EI+ FA   +   FP+F K+ V G    P ++ L
Sbjct:   14 AAACAQSEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQNYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDTNREIENFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 131          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: BSAA_STAEQ (Glutathione peroxidase homolog bsaA OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=bsaA PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.060e-23
Identity = 53/117 (45.30%), Postives = 71/117 (60.68%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWGNF 634
            S+YD  V++ DG    L ++KGKVL+IVN A+ C L    +++L  LY+KY   G EIL+FPCN F  QEPG   +I      +F   FPI  K++VNG +  P+Y LLK K  G F
Sbjct:    2 SIYDIAVENYDGSTYLLKRYKGKVLIIVNTATNCTLN-DQFNKLEMLYKKYHKYGLEILSFPCNDFNNQEPGLIKDIYRVYKYKFGITFPIHAKINVNGEHEHPLYTLLKCKQPGLF 117          

HSP 2 Score: 25.409 bits (54), Expect = 5.060e-23
Identity = 8/15 (53.33%), Postives = 11/15 (73.33%), Query Frame = 3
Query:  627 GILGDLVKWNFEKFL 671
            G+ G  +KWNF KF+
Sbjct:  115 GLFGSQIKWNFTKFV 129          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX7_HUMAN (Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 54/118 (45.76%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            A A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P ++ L
Sbjct:   15 AAACAQQEQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 132          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX7_BOVIN (Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.263e-23
Identity = 54/118 (45.76%), Postives = 67/118 (56.78%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            A A A  E+  YDF   +I GK V L K++G V L+VNVAS CG T  +Y  L  L        F +LAFPCNQFG QEP SN EI+ FA   +   FP+F K+ V G    P ++ L
Sbjct:   14 AAACAPREQDFYDFKAVNIRGKLVSLEKYRGSVSLVVNVASECGFTDQHYRALQQLQRDLGPHHFNVLAFPCNQFGQQEPDSNKEIESFARRTYSVSFPMFSKIAVTGTGAHPAFKYL 131          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_MOUSE (Probable glutathione peroxidase 8 OS=Mus musculus GN=Gpx8 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.531e-22
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            S Y F VKD  G+ V L KFKGK  L+VNVAS C  T  +Y  L  L++++    F +LAFPCNQFG  EP S+ E++ FA   +   FPIF K+ + GP   P ++ +
Sbjct:   46 SFYSFEVKDAKGRTVSLEKFKGKASLVVNVASDCRFTDKSYQTLRELHKEFGPYHFNVLAFPCNQFGESEPKSSKEVESFARQNYGVTFPIFHKIKILGPEAEPAFRFI 154          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_BOVIN (Probable glutathione peroxidase 8 OS=Bos taurus GN=GPX8 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.000e-22
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            S Y F VKD +G+ V L KFKGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E+  FA   F   FPIF K+ + G    P ++ L
Sbjct:   46 SFYTFEVKDANGRVVSLEKFKGKVALVVNVASDCQLTDRNYLALQELHKEFGPFHFSVLAFPCNQFGESEPRPSKEVVSFARNNFGVTFPIFHKIKILGSEAEPAFRFL 154          
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
BSAA_STAAR1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAN1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAM1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
BSAA_STAAC1.385e-2343.94Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX7_MOUSE2.363e-2345.76Glutathione peroxidase 7 OS=Mus musculus GN=Gpx7 P... [more]
BSAA_STAEQ5.060e-2345.30Glutathione peroxidase homolog bsaA OS=Staphylococ... [more]
GPX7_HUMAN5.263e-2345.76Glutathione peroxidase 7 OS=Homo sapiens GN=GPX7 P... [more]
GPX7_BOVIN5.263e-2345.76Glutathione peroxidase 7 OS=Bos taurus GN=GPX7 PE=... [more]
GPX8_MOUSE1.531e-2244.95Probable glutathione peroxidase 8 OS=Mus musculus ... [more]
GPX8_BOVIN2.000e-2247.71Probable glutathione peroxidase 8 OS=Bos taurus GN... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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