FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_YEAST (Glutathione peroxidase 1 OS=Saccharomyces cerevisiae GN=GPX1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 5.819e-22
Identity = 52/116 (44.83%), Postives = 68/116 (58.62%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKCWG 628
            +  Y F+  D +G   P +  + KV+LIVNVAS C  TP  Y EL +LYEKYK+ G  I+AFPC QFG QE   + EI +F   ++   FPI  K+  NG    PVY+ LK+   G
Sbjct:    2 QEFYSFSPIDENGNPFPFNSLRNKVVLIVNVASHCAFTPQ-YKELEYLYEKYKSHGLVIVAFPCGQFGNQEFEKDKEINKFCQDKYGVTFPILHKIRCNGQKQDPVYKFLKNSVSG 116          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_HUMAN (Probable glutathione peroxidase 8 OS=Homo sapiens GN=GPX8 PE=1 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 9.926e-22
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            S Y F VKD  G+ V L K+KGKV L+VNVAS C LT  NY  L  L++++    F +LAFPCNQFG  EP  + E++ FA   +   FPIF K+ + G    P ++ L
Sbjct:   46 SFYAFEVKDAKGRTVSLEKYKGKVSLVVNVASDCQLTDRNYLGLKELHKEFGPSHFSVLAFPCNQFGESEPRPSKEVESFARKNYGVTFPIFHKIKILGSEGEPAFRFL 154          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8B_XENLA (Probable glutathione peroxidase 8-B OS=Xenopus laevis GN=gpx8-B PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.211e-21
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 2
Query:  290 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            Y + V D  G+ V LSK++GK  L+VNVAS C  T +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI+  A   +   FP+F K+ + G    P Y+ L
Sbjct:   48 YSYEVTDAKGRTVALSKYRGKASLVVNVASGCPHTEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNKEIEAMAKRNYGVTFPVFSKIKILGSEAEPAYRFL 154          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8A_XENLA (Probable glutathione peroxidase 8-A OS=Xenopus laevis GN=gpx8-A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.170e-20
Identity = 46/107 (42.99%), Postives = 62/107 (57.94%), Query Frame = 2
Query:  290 YDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            Y + V D  G+ V LSK++GK  L+VNVAS C    +NY  L  L+ ++    F +LAFPCNQFG  EPG+N EI   A   +   FP+F K+ + G    P Y+ L
Sbjct:   48 YSYEVTDAKGRAVALSKYRGKASLVVNVASGCPHAEANYRSLQELHREFGPSHFTVLAFPCNQFGESEPGTNQEIGALAKRNYGVTFPMFSKIKILGSEAEPAYRFL 154          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_CAEEL (Glutathione peroxidase OS=Caenorhabditis elegans GN=C11E4.2 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.682e-20
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 2
Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFK--------AEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            T +S++DF ++ + G+   LS+++GKV+L+VNVA+ C  T   Y++ + + EKY+ QG  ++AFPCNQF  QEP  N E+     T  +         E  I+ K+DVNG N  P+Y+ +K  C
Sbjct:   37 TNQSIFDFQIETLQGEYTDLSQYRGKVILLVNVATFCAYT-QQYTDFNPMLEKYQAQGLTLVAFPCNQFYLQEPAENHELMN-GLTYVRPGNGWTPHQELHIYGKIDVNGDNHHPLYEFVKESC 158          

HSP 2 Score: 21.9422 bits (45), Expect = 4.682e-20
Identity = 7/9 (77.78%), Postives = 8/9 (88.89%), Query Frame = 3
Query:  645 VKWNFEKFL 671
            + WNFEKFL
Sbjct:  181 ITWNFEKFL 189          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX8_DANRE (Probable glutathione peroxidase 8 OS=Danio rerio GN=gpx8 PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.447e-20
Identity = 46/110 (41.82%), Postives = 67/110 (60.91%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            K  Y + VKD  G+ V L K++GKV L+VNVAS   LT  +Y  L  L+ +  T  F +LAFPC+Q+G  E G++ EI+ FA + +   FPIF+K+ + G    P ++ L
Sbjct:   46 KDFYSYEVKDARGRTVSLEKYRGKVSLVVNVASGSELTEQSYRALQELHRELGTSHFNVLAFPCSQYGDTESGTSREIEAFAKSNYGVTFPIFNKIKIMGSEAEPAFRFL 155          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX5_MOUSE (Epididymal secretory glutathione peroxidase OS=Mus musculus GN=Gpx5 PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.031e-19
Identity = 53/119 (44.54%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  284 SLYDFTVKDIDGK-DVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++YD+    ++GK D+P  +++GK +L VNVA+ CGLT   Y EL+ L E  K  G  IL FPCNQFG QEPG N EI       R    F   F +F K DVNG N   ++  LK  C
Sbjct:   39 TIYDYEALSLNGKEDIPFKQYRGKHVLFVNVATYCGLT-IQYPELNALQEDLKPFGLVILGFPCNQFGKQEPGDNLEILPGLKYVRPGKGFLPNFQLFAKGDVNGENEQKIFTFLKRSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.031e-19
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX_ENCCU (Probable phospholipid hydroperoxide glutathione peroxidase OS=Encephalitozoon cuniculi GN=ECU02_0440 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.283e-19
Identity = 43/110 (39.09%), Postives = 62/110 (56.36%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLL 610
            ++ Y  + +  DG +V L  F+G V++I NVAS C    SNY   + L +K+  +G  IL FPCNQ+ GQE     EI+     ++   F +FDKVDV G    PV++ L
Sbjct:    8 EAFYGLSARGWDGSEVSLGSFRGCVIMIANVASSCKFAESNYKSFAGLLDKFYRKGLRILLFPCNQYLGQESRPIEEIRGEVSKKYSDRFVVFDKVDVFGKGAHPVFRHL 117          

HSP 2 Score: 27.335 bits (59), Expect = 2.283e-19
Identity = 10/15 (66.67%), Postives = 12/15 (80.00%), Query Frame = 3
Query:  627 GILGDLVKWNFEKFL 671
            G LG+ +KWNF KFL
Sbjct:  125 GRLGNFIKWNFTKFL 139          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX6_RAT (Glutathione peroxidase 6 OS=Rattus norvegicus GN=Gpx6 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.427e-18
Identity = 51/119 (42.86%), Postives = 68/119 (57.14%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    +DG + V   ++ GK +L VNVAS CGLT + Y EL+ L E+ +     +L FPCNQFG QEPG N EI       R    F   F +F+K DVNG N   V+  LKS C
Sbjct:   39 TVYEYGANTLDGGEYVQFQQYAGKHILFVNVASFCGLT-ATYPELNTLQEELRPFNVSVLGFPCNQFGKQEPGKNSEILLGLKYVRPGGGFVPNFQLFEKGDVNGDNEQKVFSFLKSSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.427e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX3_BOVIN (Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 1.854e-18
Identity = 51/121 (42.15%), Postives = 68/121 (56.20%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    IDG++ +P  ++ GK +L VNVAS  GLT   Y EL+ L E+ +  G  IL FPCNQFG QEPG N EI   A  +       F   F +F+K DVNG      Y  LK+ C
Sbjct:   39 TIYEYGALTIDGEEYIPFKQYAGKYILFVNVASYUGLT-GQYVELNALQEELEPFGLVILGFPCNQFGKQEPGENSEI--LATLKYVRPGGGFTPNFQLFEKGDVNGEKEQKFYTFLKNSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.854e-18
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_YEAST5.819e-2244.83Glutathione peroxidase 1 OS=Saccharomyces cerevisi... [more]
GPX8_HUMAN9.926e-2245.87Probable glutathione peroxidase 8 OS=Homo sapiens ... [more]
GPX8B_XENLA2.211e-2143.93Probable glutathione peroxidase 8-B OS=Xenopus lae... [more]
GPX8A_XENLA4.170e-2042.99Probable glutathione peroxidase 8-A OS=Xenopus lae... [more]
GPX3_CAEEL4.682e-2038.71Glutathione peroxidase OS=Caenorhabditis elegans G... [more]
GPX8_DANRE5.447e-2041.82Probable glutathione peroxidase 8 OS=Danio rerio G... [more]
GPX5_MOUSE1.031e-1944.54Epididymal secretory glutathione peroxidase OS=Mus... [more]
GPX_ENCCU2.283e-1939.09Probable phospholipid hydroperoxide glutathione pe... [more]
GPX6_RAT1.427e-1842.86Glutathione peroxidase 6 OS=Rattus norvegicus GN=G... [more]
GPX3_BOVIN1.854e-1842.15Glutathione peroxidase 3 OS=Bos taurus GN=GPX3 PE=... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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