FC872958

Overview
NameFC872958
Unique NameFC872958
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1062 contig Ccv1_Contig1062:60..736. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_HYLLA (Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 PE=2 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 9.547e-17
Identity = 46/125 (36.80%), Postives = 69/125 (55.20%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            A   AA  +S+Y F+ + + G + V L   +GK+LLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG    P++  L+
Sbjct:    4 ARLAAAAAQSVYAFSARPLTGGEPVSLGSLRGKILLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHPLFAFLR 128          

HSP 2 Score: 23.8682 bits (50), Expect = 9.547e-17
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  158 VAWNFEKFLVG 168          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX_MCV1 (Glutathione peroxidase OS=Molluscum contagiosum virus subtype 1 GN=GPX1 PE=3 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.237e-16
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  215 SNLPGFFVKRRSFGAHATAATEKSLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEF-----ACTRFKAEFPIFDKVDVNGPNTAPVYQLLK 613
            +  P F      + A   AA  +S+Y F+ + I G + V L   +G+VLLI NVAS  G T   Y++++ L  +   +G  +L FPCNQFG QE   N EI            F+  F +F+K +VNG    P++  L+
Sbjct:    7 ARFPRFSELCAKYAAQLAAAETRSVYAFSARPITGGEPVSLGFLRGRVLLIENVASLUGSTVREYTQMNELQRRLGARGLVVLGFPCNQFGHQENAQNAEILPSLKHVRPGNGFEPNFMLFEKCEVNGARAHPLFAFLR 145          

HSP 2 Score: 23.8682 bits (50), Expect = 1.237e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  175 VAWNFEKFLVG 185          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPXC_DIRIM (Glutathione peroxidase OS=Dirofilaria immitis PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 1.609e-16
Identity = 47/123 (38.21%), Postives = 69/123 (56.10%), Query Frame = 2
Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            T +++YDF V  +DG +  L++++GKVLL+VNVA+ C  T   Y++ + + E       +ILAFPCNQF  QEP  N E       ++            IF KV+VNG +  P+Y+ LK  C
Sbjct:   36 TSQTIYDFHVPTLDGSEKSLAEYRGKVLLLVNVATYCAYT-FQYNDFNPMLENNSNGTLKILAFPCNQFLLQEPAENHELLNGLKYVRPGNGWEPHGNMHIFGKVEVNGDDHHPLYKFLKEHC 157          

HSP 2 Score: 21.1718 bits (43), Expect = 1.609e-16
Identity = 7/7 (100.00%), Postives = 7/7 (100.00%), Query Frame = 3
Query:  651 WNFEKFL 671
            WNFEKFL
Sbjct:  182 WNFEKFL 188          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_BOVIN (Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=1 SV=3)

HSP 1 Score: 80.4925 bits (197), Expect = 2.096e-16
Identity = 46/127 (36.22%), Postives = 70/127 (55.12%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKEFACTR-------FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            A   AA  +++Y F+ + +  G+   LS  +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI    C +       F+  F +F+K +VNG    P++  L+
Sbjct:    9 AALAAAAPRTVYAFSARPLAGGEPFNLSSLRGKVLLIENVASLUGTTVRDYTQMNDLQRRLGPRGLVVLGFPCNQFGHQENAKNEEI--LNCLKYVRPGGGFEPNFMLFEKCEVNGEKAHPLFAFLR 133          

HSP 2 Score: 24.2534 bits (51), Expect = 2.096e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  163 VSWNFEKFLVG 173          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_RAT (Glutathione peroxidase 2 OS=Rattus norvegicus GN=Gpx2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 4.617e-16
Identity = 46/118 (38.98%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    F+  F +  K DVNG N  PV+  LK K
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYTQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRHGGGFQPTFSLTQKCDVNGQNQHPVFAYLKDK 122          

HSP 2 Score: 24.2534 bits (51), Expect = 4.617e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VSWNFEKFLIG 160          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_PANTR (Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX1 PE=2 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 5.988e-16
Identity = 46/125 (36.80%), Postives = 68/125 (54.40%), Query Frame = 2
Query:  257 AHATAATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            A   AA  +S+Y F+ + +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L  +   +G  +L FPCNQFG QE   N EI       R    F+  F +F+K +VNG     ++  L+
Sbjct:    4 ARLAAAAAQSVYAFSARPLAGGEPVSLGSLRGKVLLIENVASLUGTTVRDYTQMNELQRRLGPRGLVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFEKCEVNGAGAHTLFAFLR 128          

HSP 2 Score: 23.8682 bits (50), Expect = 5.988e-16
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  158 VAWNFEKFLVG 168          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX1_RABIT (Glutathione peroxidase 1 OS=Oryctolagus cuniculus GN=GPX1 PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.787e-16
Identity = 46/121 (38.02%), Postives = 67/121 (55.37%), Query Frame = 2
Query:  269 AATEKSLYDFTVKDI-DGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLK 613
            AA  +S+Y F+   +  G+ V L   +GKVLLI NVAS  G T  +Y++++ L E+   +   +L FPCNQFG QE   N EI       R    F+  F +F K +VNG   +P++  L+
Sbjct:    7 AAAAQSVYSFSAHPLAGGEPVNLGSLRGKVLLIENVASLUGTTVRDYTQMNELQERLGPRALVVLGFPCNQFGHQENAKNEEILNSLKYVRPGGGFEPNFMLFQKCEVNGAKASPLFAFLR 127          

HSP 2 Score: 22.3274 bits (46), Expect = 7.787e-16
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V W+FEKFL G
Sbjct:  157 VSWSFEKFLVG 167          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX5_CANFA (Epididymal secretory glutathione peroxidase OS=Canis familiaris GN=GPX5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.009e-15
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 2
Query:  284 SLYDFTVKDIDGKD-VPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI----KEFACTR-FKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            ++Y++    ++G + +   ++  K +L VNVA+ CGLT + Y EL+ L E+ K  G  +L FPCNQFG Q PG N EI    K     R +   F +F+K DVNG     V+  LK  C
Sbjct:   39 TIYEYEALTLNGNERIQFKQYPRKHVLFVNVATYCGLT-AQYPELNSLQEELKPLGLVVLGFPCNQFGKQGPGENSEILPGLKYVRPGRGYVPNFQLFEKGDVNGEKEQKVFTFLKLSC 156          

HSP 2 Score: 24.6386 bits (52), Expect = 1.009e-15
Identity = 8/11 (72.73%), Postives = 10/11 (90.91%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            ++WNFEKFL G
Sbjct:  179 IRWNFEKFLVG 189          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPX2_MOUSE (Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 1.014e-15
Identity = 45/118 (38.14%), Postives = 65/118 (55.08%), Query Frame = 2
Query:  281 KSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEI-KEFACTR----FKAEFPIFDKVDVNGPNTAPVYQLLKSK 619
            KS YD +   +DG+ +  + F+G+ +LI NVAS  G T  +Y++L+ L  ++  +   +L FPCNQFG QE   N EI       R    ++  F +  K DVNG N  PV+  LK K
Sbjct:    6 KSFYDLSAIGLDGEKIDFNTFRGRAVLIENVASLUGTTTRDYNQLNELQCRFPRR-LVVLGFPCNQFGHQENCQNEEILNSLKYVRPGGGYQPTFSLTQKCDVNGQNEHPVFAYLKDK 122          

HSP 2 Score: 24.2534 bits (51), Expect = 1.014e-15
Identity = 9/11 (81.82%), Postives = 9/11 (81.82%), Query Frame = 3
Query:  645 VKWNFEKFLSG 677
            V WNFEKFL G
Sbjct:  150 VSWNFEKFLIG 160          
BLAST of FC872958 vs. ExPASy Swiss-Prot
Match: GPXC_BRUPA (Cuticular glutathione peroxidase OS=Brugia pahangi PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.877e-15
Identity = 45/123 (36.59%), Postives = 66/123 (53.66%), Query Frame = 2
Query:  275 TEKSLYDFTVKDIDGKDVPLSKFKGKVLLIVNVASRCGLTPSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPE-------IKEFACTRFKAEFPIFDKVDVNGPNTAPVYQLLKSKC 622
            T +++YDF V+ ++G    L++++ KVLLIVNVA+ C  T   Y + + + E        IL FPCNQF  QEP  N E       ++            IF K++VNG N  P+Y+ LK +C
Sbjct:   38 TNQTVYDFQVQMLNGAQKSLAEYRNKVLLIVNVATYCAYT-MQYRDFNPILESNSNGTLNILGFPCNQFYLQEPAENHELLSGLKYVRPGHGWEPHKNMHIFGKLEVNGENDHPLYKFLKERC 159          

HSP 2 Score: 21.557 bits (44), Expect = 2.877e-15
Identity = 8/9 (88.89%), Postives = 8/9 (88.89%), Query Frame = 3
Query:  645 VKWNFEKFL 671
            V WNFEKFL
Sbjct:  182 VIWNFEKFL 190          
The following BLAST results are available for this feature:
BLAST of FC872958 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
GPX1_HYLLA9.547e-1736.80Glutathione peroxidase 1 OS=Hylobates lar GN=GPX1 ... [more]
GPX_MCV11.237e-1634.53Glutathione peroxidase OS=Molluscum contagiosum vi... [more]
GPXC_DIRIM1.609e-1638.21Glutathione peroxidase OS=Dirofilaria immitis PE=2... [more]
GPX1_BOVIN2.096e-1636.22Glutathione peroxidase 1 OS=Bos taurus GN=GPX1 PE=... [more]
GPX2_RAT4.617e-1638.98Glutathione peroxidase 2 OS=Rattus norvegicus GN=G... [more]
GPX1_PANTR5.988e-1636.80Glutathione peroxidase 1 OS=Pan troglodytes GN=GPX... [more]
GPX1_RABIT7.787e-1638.02Glutathione peroxidase 1 OS=Oryctolagus cuniculus ... [more]
GPX5_CANFA1.009e-1538.66Epididymal secretory glutathione peroxidase OS=Can... [more]
GPX2_MOUSE1.014e-1538.14Glutathione peroxidase 2 OS=Mus musculus GN=Gpx2 P... [more]
GPXC_BRUPA2.877e-1536.59Cuticular glutathione peroxidase OS=Brugia pahangi... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG11FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872958 ID=FC872958; Name=FC872958; organism=Citrus clementina; type=EST; length=678bp
ATTGCAACGCCCTTAAACCCCCGAACTGGTGTCGGACTCTATGTCGTTCG
AAGGATATCTGGCCTCACATAAACCGGATTTCACACCTAACAAAACATGC
CCTGCTGCATGGGCTACATCAATGGCGGCTTCATGGACTCCTACTAATTC
AATCAAAGCATCGATTGGGTCCGCTAAACCAGGCTTGCTTCAACATGGGC
TGTTTTCCCAATCTTCAAATTTGCCTGGGTTTTTCGTGAAACGTCGTTCC
TTTGGTGCTCACGCTACAGCTGCTACTGAGAAGTCTTTATATGACTTCAC
CGTCAAGGATATTGATGGTAAAGATGTTCCTCTTAGCAAGTTTAAGGGCA
AAGTTCTGTTGATTGTGAATGTCGCTTCAAGATGTGGCTTGACACCATCT
AATTACTCGGAGCTCTCTCACTTATATGAGAAGTACAAGACTCAAGGATT
TGAGATTCTAGCTTTCCCTTGCAATCAATTTGGTGGGCAAGAGCCTGGAT
CAAACCCTGAGATCAAGGAATTCGCTTGTACTAGGTTTAAGGCAGAATTT
CCCATATTTGACAAGGTTGATGTAAATGGACCAAACACAGCTCCAGTTTA
CCAGTTATTGAAGTCCAAGTGCTGGGGGAATTTTAGGCGACCTTGTCAAG
TGGAACTTTGAGAAGTTCTTAAGTGGAC
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