FC872959
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_PIG (40S ribosomal protein S20 OS=Sus scrofa GN=RPS20 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 5.335e-41 Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 3 Query: 105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458 A K T E + IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+ KR+IDL S ++VKQITSI+IEPGVEVEVTIAD+ Sbjct: 2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIPKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_DROME (40S ribosomal protein S20 OS=Drosophila melanogaster GN=RpS20 PE=1 SV=1) HSP 1 Score: 160.614 bits (405), Expect = 8.517e-39 Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = 3 Query: 93 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455 MA A KP + ++ +H+IRITL+S+NV++LE VC DL+ GAK++ LRVKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S ++VK+ITSI IEPGVEVEVTIA+ Sbjct: 1 MAAAPKDIEKPHVGDSAS-VHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_SCHPO (40S ribosomal protein S20 OS=Schizosaccharomyces pombe GN=rps20 PE=1 SV=1) HSP 1 Score: 156.377 bits (394), Expect = 1.606e-37 Identity = 73/107 (68.22%), Postives = 93/107 (86.92%), Query Frame = 3 Query: 132 EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 452 ++ +H+IRITL+S+NV+NLEKVC+DLV AKDK+LRVKGPVR+PTK+L ITTRK+P GEG+ TW+ +E+R+HKR+IDL S ++VKQITSI IEPGVEVEVTIA Sbjct: 11 QQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_DICDI (40S ribosomal protein S20 OS=Dictyostelium discoideum GN=rps20 PE=3 SV=1) HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33 Identity = 71/132 (53.79%), Postives = 97/132 (73.48%), Query Frame = 3 Query: 48 VSRNPIRKI**KQETMAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 443 +S NPI+K +ET+A A ++KI ITL+S+N K+LEKVC D++ AK+K+++ KGP+R+P KVL ITTRKSPCGEGTNTWDRFE+R+HKRVI + S+ D VK++ +I+IE GV+VEV Sbjct: 1 MSMNPIKKT---EETVAAPA--------------VNKISITLTSRNPKSLEKVCADIITLAKNKKVKAKGPIRIPNKVLKITTRKSPCGEGTNTWDRFEMRIHKRVIHILSTQDFVKEMNTISIEAGVDVEV 115
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_YEAST (40S ribosomal protein S20 OS=Saccharomyces cerevisiae GN=RPS20 PE=1 SV=3) HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29 Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 3 Query: 132 EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458 E+ Q+QI KIRITL+S VK LE V +++V+ A+ L KGPVR+PTKVL I+TRK+P GEG+ TW+ +E+R+HKR IDL + +VK+IT ITIEPGV+VEV +A + Sbjct: 13 EQQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVASN 121
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_MAIZE (40S ribosomal protein S20 (Fragment) OS=Zea mays GN=RPS20 PE=3 SV=1) HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26 Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 3 Query: 198 EKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL 374 EKVC DLV+GAKDK LRVKGPVR+PTKVLHITTRKSPCGEGTNTWDRFE R+HKRVIDL Sbjct: 1 EKVCADLVKGAKDKHLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDL 59
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEON (30S ribosomal protein S10P OS=Thermococcus onnurineus (strain NA1) GN=rps10p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17 Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449 + K RI L+S N+K L +V + + A+ +R+ GP+ +PTK + ITTRKSP GEGT T+DRFELRVHKR++D+ + ++QI I + V +E+ + Sbjct: 1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEGJ (30S ribosomal protein S10P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps10p PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17 Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449 + K RI L+S N+K L +V + + A+ +R+ GP+ +PTK + ITTRKSP GEGT T+DRFELRVHKR++D+ + ++QI I + V +E+ + Sbjct: 1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEVO (30S ribosomal protein S10P OS=Thermoplasma volcanium GN=rps10p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17 Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 3 Query: 153 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449 +K RI+LS K ++ VC+++ A + + GP+ +PTK L + RKSP GEGTNTWD +E+R+HKR+ID+ + ++Q+ I I GV++E+ I Sbjct: 4 YKARISLSGTEHKIVDMVCSEIKEIASRTGVEIHGPMPLPTKKLVVPVRKSPDGEGTNTWDHWEMRIHKRLIDVDADERTLRQLMRIPIPDGVQIEIQI 102
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRKO (30S ribosomal protein S10P OS=Pyrococcus kodakaraensis GN=rps10p PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17 Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 3 Query: 150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449 + K RI L+S N+K L +V + + A+ +R+ GP+ +PTK + ITTRKSP GEG+ T+DRFELRVHKR++D+ + ++QI I + V +E+ + Sbjct: 1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100 The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 74
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Sequences
The
following sequences are available for this feature:
EST sequence >FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bpback to top |