FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_PIG (40S ribosomal protein S20 OS=Sus scrofa GN=RPS20 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 5.335e-41
Identity = 81/118 (68.64%), Postives = 99/118 (83.90%), Query Frame = 3
Query:  105 AMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            A K T     E +  IH+IRITL+S+NVK+LEKVC DL+RGAK+K L+VKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+ KR+IDL S  ++VKQITSI+IEPGVEVEVTIAD+
Sbjct:    2 AFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIPKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA 119          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_DROME (40S ribosomal protein S20 OS=Drosophila melanogaster GN=RpS20 PE=1 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 8.517e-39
Identity = 77/121 (63.64%), Postives = 99/121 (81.82%), Query Frame = 3
Query:   93 MAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            MA A     KP + ++   +H+IRITL+S+NV++LE VC DL+ GAK++ LRVKGPVRMPTK L ITTRK+PCGEG+ TWDRF++R+HKR+IDL S  ++VK+ITSI IEPGVEVEVTIA+
Sbjct:    1 MAAAPKDIEKPHVGDSAS-VHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGVEVEVTIAN 120          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_SCHPO (40S ribosomal protein S20 OS=Schizosaccharomyces pombe GN=rps20 PE=1 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.606e-37
Identity = 73/107 (68.22%), Postives = 93/107 (86.92%), Query Frame = 3
Query:  132 EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIA 452
            ++    +H+IRITL+S+NV+NLEKVC+DLV  AKDK+LRVKGPVR+PTK+L ITTRK+P GEG+ TW+ +E+R+HKR+IDL S  ++VKQITSI IEPGVEVEVTIA
Sbjct:   11 QQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQITSIHIEPGVEVEVTIA 117          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_DICDI (40S ribosomal protein S20 OS=Dictyostelium discoideum GN=rps20 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.984e-33
Identity = 71/132 (53.79%), Postives = 97/132 (73.48%), Query Frame = 3
Query:   48 VSRNPIRKI**KQETMAYAAMKPTKPGLEEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 443
            +S NPI+K    +ET+A  A              ++KI ITL+S+N K+LEKVC D++  AK+K+++ KGP+R+P KVL ITTRKSPCGEGTNTWDRFE+R+HKRVI + S+ D VK++ +I+IE GV+VEV
Sbjct:    1 MSMNPIKKT---EETVAAPA--------------VNKISITLTSRNPKSLEKVCADIITLAKNKKVKAKGPIRIPNKVLKITTRKSPCGEGTNTWDRFEMRIHKRVIHILSTQDFVKEMNTISIEAGVDVEV 115          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_YEAST (40S ribosomal protein S20 OS=Saccharomyces cerevisiae GN=RPS20 PE=1 SV=3)

HSP 1 Score: 128.257 bits (321), Expect = 4.684e-29
Identity = 62/109 (56.88%), Postives = 84/109 (77.06%), Query Frame = 3
Query:  132 EEAQEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS 458
            E+ Q+QI KIRITL+S  VK LE V +++V+ A+   L  KGPVR+PTKVL I+TRK+P GEG+ TW+ +E+R+HKR IDL +   +VK+IT ITIEPGV+VEV +A +
Sbjct:   13 EQQQQQIIKIRITLTSTKVKQLENVSSNIVKNAEQHNLVKKGPVRLPTKVLKISTRKTPNGEGSKTWETYEMRIHKRYIDLEAPVQIVKRITQITIEPGVDVEVVVASN 121          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS20_MAIZE (40S ribosomal protein S20 (Fragment) OS=Zea mays GN=RPS20 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.269e-26
Identity = 53/59 (89.83%), Postives = 56/59 (94.92%), Query Frame = 3
Query:  198 EKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDL 374
            EKVC DLV+GAKDK LRVKGPVR+PTKVLHITTRKSPCGEGTNTWDRFE R+HKRVIDL
Sbjct:    1 EKVCADLVKGAKDKHLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDL 59          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEON (30S ribosomal protein S10P OS=Thermococcus onnurineus (strain NA1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+S N+K L +V   + + A+   +R+ GP+ +PTK + ITTRKSP GEGT T+DRFELRVHKR++D+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEGJ (30S ribosomal protein S10P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps10p PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.414e-17
Identity = 44/100 (44.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+S N+K L +V   + + A+   +R+ GP+ +PTK + ITTRKSP GEGT T+DRFELRVHKR++D+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGTATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEVO (30S ribosomal protein S10P OS=Thermoplasma volcanium GN=rps10p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 41/99 (41.41%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  153 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            +K RI+LS    K ++ VC+++   A    + + GP+ +PTK L +  RKSP GEGTNTWD +E+R+HKR+ID+ +    ++Q+  I I  GV++E+ I
Sbjct:    4 YKARISLSGTEHKIVDMVCSEIKEIASRTGVEIHGPMPLPTKKLVVPVRKSPDGEGTNTWDHWEMRIHKRLIDVDADERTLRQLMRIPIPDGVQIEIQI 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRKO (30S ribosomal protein S10P OS=Pyrococcus kodakaraensis GN=rps10p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.113e-17
Identity = 43/100 (43.00%), Postives = 67/100 (67.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+S N+K L +V   + + A+   +R+ GP+ +PTK + ITTRKSP GEG+ T+DRFELRVHKR++D+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKLASTNIKALNEVTDQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRFELRVHKRLVDIEADERAMRQIMRIRVPEDVTIEIEL 100          
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS20_PIG5.335e-4168.6440S ribosomal protein S20 OS=Sus scrofa GN=RPS20 P... [more]
RS20_DROME8.517e-3963.6440S ribosomal protein S20 OS=Drosophila melanogast... [more]
RS20_SCHPO1.606e-3768.2240S ribosomal protein S20 OS=Schizosaccharomyces p... [more]
RS20_DICDI6.984e-3353.7940S ribosomal protein S20 OS=Dictyostelium discoid... [more]
RS20_YEAST4.684e-2956.8840S ribosomal protein S20 OS=Saccharomyces cerevis... [more]
RS20_MAIZE8.269e-2689.8340S ribosomal protein S20 (Fragment) OS=Zea mays G... [more]
RS10_THEON1.414e-1744.0030S ribosomal protein S10P OS=Thermococcus onnurin... [more]
RS10_THEGJ1.414e-1744.0030S ribosomal protein S10P OS=Thermococcus gammato... [more]
RS10_THEVO4.113e-1741.4130S ribosomal protein S10P OS=Thermoplasma volcani... [more]
RS10_PYRKO4.113e-1743.0030S ribosomal protein S10P OS=Pyrococcus kodakarae... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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