FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRWO (30S ribosomal protein S10P OS=Pyrococcus woesei GN=rps10p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI ++S NV++L++V   + + A+   +R+ GP+ +PTK + ITTRKSP GEG+ T+DR+ELRVHKR+ID+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRFU (30S ribosomal protein S10P OS=Pyrococcus furiosus GN=rps10p PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.372e-17
Identity = 42/100 (42.00%), Postives = 69/100 (69.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI ++S NV++L++V   + + A+   +R+ GP+ +PTK + ITTRKSP GEG+ T+DR+ELRVHKR+ID+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKIASTNVRSLDEVANQIKQIAERTGVRMSGPIPLPTKRIRITTRKSPDGEGSATFDRWELRVHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THEAC (30S ribosomal protein S10P OS=Thermoplasma acidophilum GN=rps10p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 40/99 (40.40%), Postives = 65/99 (65.66%), Query Frame = 3
Query:  153 HKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            +K RI+LS    + +++VC ++   A    + + GP+ +PTK L +  RKSP GEGTNTWD +E+R+HKR+ID+ +    ++Q+  I I  GV++E+ I
Sbjct:    4 YKARISLSGTEHRVVDRVCNEIKEIASRTGVEIHGPMPLPTKRLVVPVRKSPDGEGTNTWDHWEMRIHKRLIDVDADERTLRQLMRIPIPDGVQIEIQI 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRAB (30S ribosomal protein S10P OS=Pyrococcus abyssi GN=rps10p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 42/100 (42.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+S NV++LE+V   + + A+   +R+ GP+ +PTK + I TRKSP GEG+ T+DR+ELR+HKR+ID+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKLASTNVRSLEEVANQIKQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PICTO (30S ribosomal protein S10P OS=Picrophilus torridus GN=rps10p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.016e-17
Identity = 42/100 (42.00%), Postives = 66/100 (66.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            ++K RI+LS    K ++ VC ++   AK   + + GP+ +PTK L +  RKSP GEG+ TWDR+E+RVHKR+ID+ +    ++Q+  I+I  GV +E+ I
Sbjct:    2 VYKARISLSGTENKIVDVVCEEIKGIAKRTGVEIHGPIPLPTKRLVVPVRKSPDGEGSPTWDRWEMRVHKRLIDVDADERTLRQLMRISIPDGVRIEIQI 101          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRHO (30S ribosomal protein S10P OS=Pyrococcus horikoshii GN=rps10p PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.163e-17
Identity = 42/100 (42.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+S NV++LE+V   + + A+   +R+ GP+ +PTK + I TRKSP GEG+ T+DR+ELR+HKR+ID+ +    ++QI  I +   V +E+ +
Sbjct:    1 MQKARIKLASTNVRSLEEVANQIRQIAERTGVRMSGPIPLPTKRIRIVTRKSPDGEGSATFDRWELRIHKRLIDIEADERAMRQIMRIRVPEDVTIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METMA (30S ribosomal protein S10P OS=Methanosarcina mazei GN=rps10p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LS  + K+L+ VC  +   A+   + + GPV +PTK L + TRKSP G+GT TWD +E+RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLSGISPKDLDGVCNQVKSIAERTGVNISGPVPLPTKKLVVPTRKSPSGDGTATWDHWEMRVHKRLIDIAADERALRQLMRIQVPKDINIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METBF (30S ribosomal protein S10P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps10p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LS  + K+L+ VC  +   A+   + + GPV +PTK L + TRKSP G+GT TWD +E+RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLSGISPKDLDGVCNQVKSIAERTGVNISGPVPLPTKKLVVPTRKSPSGDGTATWDHWEMRVHKRLIDIAADERALRQLMRIQVPKDINIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METAC (30S ribosomal protein S10P OS=Methanosarcina acetivorans GN=rps10p PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.939e-16
Identity = 39/100 (39.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LS  + K+L+ VC  +   A+   + + GPV +PTK L + TRKSP G+GT TWD +E+RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLSGISPKDLDGVCNQVKSIAERTGVNISGPVPLPTKKLVVPTRKSPSGDGTATWDHWEMRVHKRLIDIAADERALRQLMRIQVPKDINIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_CENSY (30S ribosomal protein S10P OS=Cenarchaeum symbiosum GN=rps10p PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.728e-15
Identity = 36/94 (38.30%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  162 RITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 443
            R+ L+S N+  L+ VC  ++   K   +R+KGP  +P K LHI TRKSPCG GT T++++E+R+H+R+ID+ +    ++++  + I   V +E+
Sbjct:    6 RVKLTSINLLKLDGVCGIIMDIGKRTGVRIKGPTPLPVKKLHIATRKSPCGSGTETYEKWEMRMHRRIIDISADDKTIRRLIDLKIPDDVHLEL 99          
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_PYRWO5.372e-1742.0030S ribosomal protein S10P OS=Pyrococcus woesei GN... [more]
RS10_PYRFU5.372e-1742.0030S ribosomal protein S10P OS=Pyrococcus furiosus ... [more]
RS10_THEAC7.016e-1740.4030S ribosomal protein S10P OS=Thermoplasma acidoph... [more]
RS10_PYRAB7.016e-1742.0030S ribosomal protein S10P OS=Pyrococcus abyssi GN... [more]
RS10_PICTO7.016e-1742.0030S ribosomal protein S10P OS=Picrophilus torridus... [more]
RS10_PYRHO9.163e-1742.0030S ribosomal protein S10P OS=Pyrococcus horikoshi... [more]
RS10_METMA5.939e-1639.0030S ribosomal protein S10P OS=Methanosarcina mazei... [more]
RS10_METBF5.939e-1639.0030S ribosomal protein S10P OS=Methanosarcina barke... [more]
RS10_METAC5.939e-1639.0030S ribosomal protein S10P OS=Methanosarcina aceti... [more]
RS10_CENSY1.728e-1538.3030S ribosomal protein S10P OS=Cenarchaeum symbiosu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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