FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METMJ (30S ribosomal protein S10P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LS  + + +E VC  +   A+   + + GP+ +PTK L + TRKSP GEGT TWDR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLSGTDFEKIEMVCDRIKEIAERTGVNLAGPIPLPTKKLVVPTRKSPDGEGTATWDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HALMA (30S ribosomal protein S10P OS=Haloarcula marismortui GN=rps10p PE=3 SV=3)

HSP 1 Score: 82.8037 bits (203), Expect = 2.257e-15
Identity = 36/98 (36.73%), Postives = 62/98 (63.27%), Query Frame = 3
Query:  162 RITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            R+ L+  + ++L+ +C D+   A    + + GPV +PTK L + +RKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  I +   V +E+ + D
Sbjct:    6 RVRLAGTSPEDLDDICADVREIANKTGVELSGPVPLPTKTLEVPSRKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVSIEIVLED 103          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METJA (30S ribosomal protein S10P OS=Methanocaldococcus jannaschii GN=rps10p PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 37/98 (37.76%), Postives = 65/98 (66.33%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEV 443
            + + RI LSS + K L+++C  +   A+   + + GP+ +PTKVL + TRKSP GEG++T+DR+ +++HKR+ID+ +    ++ I  I I   V++E+
Sbjct:    1 MQRARIKLSSTDHKVLDEICRQIKEIAEKTGVDISGPIPLPTKVLRVVTRKSPDGEGSSTFDRWTMKIHKRLIDIDADERALRHIMKIRIPDNVQIEI 98          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HALWD (30S ribosomal protein S10P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 37/102 (36.27%), Postives = 63/102 (61.76%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            + + R+ L+  +  +L+ +C D+   A    + + GP+ +PTK L I TRKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  I +   V +E+ + D
Sbjct:    1 MQQARVRLAGTSPDDLDDICDDVRDIADTTGVNLSGPIPLPTKTLEIPTRKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVSIEIVLED 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HALLT (30S ribosomal protein S10P OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.948e-15
Identity = 35/102 (34.31%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            + + R+ L+  + ++L+ +C D+   A    + + GP+ +PTK L I +RKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  + +   V +E+ + D
Sbjct:    1 MQQARVRLAGTSPEDLDDICADVREIADSTGVALSGPIPLPTKTLEIPSRKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRVQVPNDVSIEIVLED 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_NITMS (30S ribosomal protein S10P OS=Nitrosopumilus maritimus (strain SCM1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 33/96 (34.38%), Postives = 65/96 (67.71%), Query Frame = 3
Query:  162 RITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            R+ L+S ++  L+ VC +++   K   ++VKGP  +P K LH+ TRKSPCG GT T++++E+++H+R+I++ +    ++Q+  + I   V +E+++
Sbjct:    6 RVKLTSTSLPKLDGVCGEIMGIGKKTGVKVKGPTPLPVKRLHVATRKSPCGNGTETYEKWEMKMHRRIININADDKAIRQLMRLKIPDDVYIELSL 101          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METLZ (30S ribosomal protein S10P OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 38/100 (38.00%), Postives = 63/100 (63.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+  + + +E VCT +   A+   + + GP+ +PTK L +  RKSP GEGT TWDR+++RVHKR+IDL +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDYEKVETVCTRIREIAERTGVNMAGPIPLPTKRLIVPIRKSPDGEGTATWDRWQMRVHKRLIDLDADERALRQLMRIQVPKDISIEIVL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_META3 (30S ribosomal protein S10P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 40/100 (40.00%), Postives = 65/100 (65.00%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS + + L+ VC ++   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  I I   V++E+ +
Sbjct:    1 MQKARIKLSSTSYQELDGVCNNIKTIAEKTGVDMAGPIPLPTKTLKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKIRIPEAVQIEIEL 100          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HALSA (30S ribosomal protein S10P OS=Halobacterium salinarium GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 36/102 (35.29%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            + + R+ L+  +  +L+ +C ++   A    ++V GPV +PTK L + +RKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  I +   V +E+ + D
Sbjct:    1 MQQARVRLAGVDPDDLDNICGEVQEIADKTGVKVSGPVPLPTKTLEVPSRKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVNIEIVLED 102          
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HALS3 (30S ribosomal protein S10P OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.850e-15
Identity = 36/102 (35.29%), Postives = 64/102 (62.75%), Query Frame = 3
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIAD 455
            + + R+ L+  +  +L+ +C ++   A    ++V GPV +PTK L + +RKSP GEGT TW+ +E+RVHKR+ID+ +    ++Q+  I +   V +E+ + D
Sbjct:    1 MQQARVRLAGVDPDDLDNICGEVQEIADKTGVKVSGPVPLPTKTLEVPSRKSPDGEGTATWEHWEMRVHKRLIDIDADERALRQLMRIQVPNDVNIEIVLED 102          
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_METMJ2.257e-1538.0030S ribosomal protein S10P OS=Methanoculleus maris... [more]
RS10_HALMA2.257e-1536.7330S ribosomal protein S10P OS=Haloarcula marismort... [more]
RS10_METJA2.948e-1537.7630S ribosomal protein S10P OS=Methanocaldococcus j... [more]
RS10_HALWD2.948e-1536.2730S ribosomal protein S10P OS=Haloquadratum walsby... [more]
RS10_HALLT2.948e-1534.3130S ribosomal protein S10P OS=Halorubrum lacusprof... [more]
RS10_NITMS3.850e-1534.3830S ribosomal protein S10P OS=Nitrosopumilus marit... [more]
RS10_METLZ3.850e-1538.0030S ribosomal protein S10P OS=Methanocorpusculum l... [more]
RS10_META33.850e-1540.0030S ribosomal protein S10P OS=Methanococcus aeolic... [more]
RS10_HALSA3.850e-1535.2930S ribosomal protein S10P OS=Halobacterium salina... [more]
RS10_HALS33.850e-1535.2930S ribosomal protein S10P OS=Halobacterium salina... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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