FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METPE (30S ribosomal protein S10P OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 36/100 (36.00%), Postives = 61/100 (61.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+  +   +E VC  +   A+   + + GP+ +PTK L +  RKSP GEGT TWDR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDFNKVEMVCDKIREIAERTGVNLAGPIPLPTKRLVVPIRKSPDGEGTATWDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METM7 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps10p PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.559e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHTELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRIL (30S ribosomal protein S10P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 36/98 (36.73%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K+RI L   N  ++E+V  ++V  AK   ++VKGP+ +PT+ L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVKGPIPLPTRRLVVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METM6 (30S ribosomal protein S10P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 39/100 (39.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI LSS     L+ VC  +   A+   + + GP+ +PTK L +TTRKS  GEG++++DR+ +RVHKRVID+ +    +K I  + I   V++E+ +
Sbjct:    1 MQKARIKLSSTQHVELDGVCDQIKAIAEKTGVDMAGPIPLPTKALKVTTRKSTDGEGSSSFDRWTMRVHKRVIDIEADERTMKHIMKVRIPDTVQIEIEL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METHJ (30S ribosomal protein S10P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 7.261e-14
Identity = 35/100 (35.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+  + + +E+VC  +   A+   + + GP+ +PT+ L +  RKSP GEGT TWDR+++RVHKR+IDL +    ++Q+    +   + +E+ +
Sbjct:    1 MQKARIRLTGTDYQKVEEVCEKIKEIAERTGVNLAGPIPLPTRKLVVPIRKSPDGEGTATWDRWQMRVHKRLIDLDADERALRQLMRTQVPKDIGIEIVL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRCJ (30S ribosomal protein S10P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.483e-14
Identity = 36/98 (36.73%), Postives = 67/98 (68.37%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K+RI L   N  +L++V  ++V  AK   + V+GP+ +PTK L +T R++P G+G +T+D +ELR+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADLDQVAREIVDLAKKMGVAVRGPIPLPTKRLMVTVRRAPSGQGYHTFDHWELRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METST (30S ribosomal protein S10P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rps10p PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.238e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            ++K RI L+  + + +  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  TW+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MNKARIKLTGTDPEKIADVCNQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKATWEKWELRIHKRLVGIEADERAMRQVMKVNVPDNVSIEIEL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METS3 (30S ribosomal protein S10P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.617e-13
Identity = 33/100 (33.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            +H+ RI L+  + + L  VC  L + A+   + + GP+ +PTK L + TRKSP GEG  +W+++ELR+HKR++ + +    ++Q+  + +   V +E+ +
Sbjct:    1 MHQARIKLTGTDPEKLAYVCDQLKKIAERTGVDLSGPIPLPTKKLVVPTRKSPDGEGKASWEKWELRIHKRLVGIGADERAMRQVMKVNVPDNVSIEIEL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_HYPBU (30S ribosomal protein S10P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps10p PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.112e-13
Identity = 36/100 (36.00%), Postives = 62/100 (62.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K  I L S NV++L +V   +   AK   +R++GP+ +PT+ L + T K P GEG+  WD++ELR+HKR++ L +   V++QI  + +   V +E+ +
Sbjct:    2 VQKAEIKLWSTNVESLNQVVEQIKAIAKKTGVRMRGPIPLPTRRLIVPTLKLPHGEGSKKWDKWELRIHKRLVILDADERVIRQIMRVRVPEDVYIEIRL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRAE (30S ribosomal protein S10P OS=Pyrobaculum aerophilum GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.759e-13
Identity = 34/98 (34.69%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K+RI L   N  ++E+V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVEQVAREIVDLAKKMGVQVRGPIPLPTRRLIVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_METPE5.559e-1436.0030S ribosomal protein S10P OS=Methanosphaerula pal... [more]
RS10_METM75.559e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]
RS10_PYRIL7.261e-1436.7330S ribosomal protein S10P OS=Pyrobaculum islandic... [more]
RS10_METM67.261e-1439.0030S ribosomal protein S10P OS=Methanococcus maripa... [more]
RS10_METHJ7.261e-1435.0030S ribosomal protein S10P OS=Methanospirillum hun... [more]
RS10_PYRCJ9.483e-1436.7330S ribosomal protein S10P OS=Pyrobaculum calidifo... [more]
RS10_METST1.238e-1333.0030S ribosomal protein S10P OS=Methanosphaera stadt... [more]
RS10_METS31.617e-1333.0030S ribosomal protein S10P OS=Methanobrevibacter s... [more]
RS10_HYPBU2.112e-1336.0030S ribosomal protein S10P OS=Hyperthermus butylic... [more]
RS10_PYRAE2.759e-1334.6930S ribosomal protein S10P OS=Pyrobaculum aerophil... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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