FC872959

Overview
NameFC872959
Unique NameFC872959
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length765
Libraries
Library NameType
AbsDevcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
FC872959_ssr22 microsatellite FC872959_ssr22:22..33. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig632 contig Ccv1_Contig632:28..792. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_THENV (30S ribosomal protein S10P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 33/98 (33.67%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K+RI L   N  ++++V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPTDVDQVAREIVDLAKKMGVQVRGPIPLPTRRLMVTVRRAPSGQGYHTFDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_PYRAR (30S ribosomal protein S10P OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rps10p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.706e-13
Identity = 33/98 (33.67%), Postives = 68/98 (69.39%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K+RI L   N  ++++V  ++V  AK   ++V+GP+ +PT+ L +T R++P G+G +T+D +E+R+ KR+ID+ +S  V++++ +I +   V++E+ +
Sbjct:    8 KVRIRLYGTNPADVDQVAREIVDLAKKMGVQVRGPIPLPTRRLVVTVRRAPSGQGYHTYDHWEMRISKRLIDIEASERVLRRLMTIRVPDTVKIELQL 105
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_METB6 (30S ribosomal protein S10P OS=Methanoregula boonei (strain 6A8) GN=rps10p PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.048e-12
Identity = 35/100 (35.00%), Postives = 61/100 (61.00%), Query Frame = 3 
Query:  150 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            + K RI L+  +   +E VC  +   A+   + + GP+ +PTK L +  RKSP GEGT T+DR+++RVHKR+ID+ +    ++Q+  I +   + +E+ +
Sbjct:    1 MQKARIRLTGTDFNKVETVCDRIREIAERTGVNLAGPIPLPTKRLVVPIRKSPDGEGTATFDRWQMRVHKRLIDIDADERALRQLMRIQVPKDIGIEIVL 100
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULSO (30S ribosomal protein S10P OS=Sulfolobus solfataricus GN=rps10p PE=3 SV=2)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIY (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIN (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIM (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIL (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIK (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
[Close]
BLAST of FC872959 vs. ExPASy Swiss-Prot
Match: RS10_SULIA (30S ribosomal protein S10P OS=Sulfolobus islandicus (strain M.16.27) GN=rps10p PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.336e-12
Identity = 36/99 (36.36%), Postives = 61/99 (61.62%), Query Frame = 3 
Query:  156 KIRITLSSKNVKNLEKVCTDLVRGAKDKR-LRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTI 449
            K RI L S NV+NL  V T  +RG  +K  + ++GP+ +PT  L +   + P GEG   W+++E+RVHKR+ID+ +   V++Q+  + +   V +E+ +
Sbjct:    4 KARIRLWSTNVENLNYVITQ-IRGIVEKTGIEMRGPIPLPTSKLEVPIMRLPHGEGRKKWEKWEMRVHKRLIDIAADERVMRQLMRVRVPEDVYIEIQL 101
The following BLAST results are available for this feature:
BLAST of FC872959 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 74
Match NameE-valueIdentityDescription
RS10_THENV4.706e-1333.6730S ribosomal protein S10P OS=Thermoproteus neutro... [more]
RS10_PYRAR4.706e-1333.6730S ribosomal protein S10P OS=Pyrobaculum arsenati... [more]
RS10_METB61.048e-1235.0030S ribosomal protein S10P OS=Methanoregula boonei... [more]
RS10_SULSO2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus solfatari... [more]
RS10_SULIY2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]
RS10_SULIN2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]
RS10_SULIM2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]
RS10_SULIL2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]
RS10_SULIK2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]
RS10_SULIA2.336e-1236.3630S ribosomal protein S10P OS=Sulfolobus islandicu... [more]

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Properties
Property NameValue
Genbank descriptionKN0AAI3DG12FM1 AbsDev Citrus clementina cDNA clone KN0AAI3DG12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC872959 ID=FC872959; Name=FC872959; organism=Citrus clementina; type=EST; length=765bp
AAGAGGCAGCACATGCAGCAACAGCAGCAGCAGCTCTCACTCTTCCGGTC
TCTCGAAATCCTATAAGGAAAATCTAGTAGAAGCAAGAAACAATGGCGTA
TGCAGCAATGAAGCCCACCAAACCGGGTTTGGAGGAGGCCCAGGAGCAGA
TTCATAAGATCAGAATCACACTTTCCTCCAAGAATGTTAAAAATCTTGAG
AAAGTCTGTACGGATTTAGTTCGTGGTGCCAAGGACAAGAGATTGAGGGT
CAAGGGTCCAGTGAGGATGCCTACCAAGGTTCTTCACATCACCACTAGGA
AGTCCCCTTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTCCGT
GTTCACAAGAGAGTTATTGATCTCTTTAGCTCCCCTGATGTCGTGAAGCA
GATCACTTCCATTACCATTGAACCTGGCGTGGAAGTGGAGGTTACCATTG
CCGACTCTTAAATGTCTGGCACTTTATTTTTGTGTCCATTTAGCTTTTAG
TGAAATCAGAAGTAATCTTCCCTCATGACACTGTTTGCTTGGAAGAATTT
GTCAAGAATTTAAGACTGAACAATCGATGTAGGGTTGATGTTAGTTTGTT
TTTTGCCATACTATTTTGCAAGTTAAAAATTATGTTTTGGGTTATGTGGA
GAGGGATTTTGTTTACTGTTCATTTTATATTAAGCAATGTTTGGATATTT
GTTTTGAATCTCTAATAGACGTTAAATATCATATGTTTTCCCCCAAAAAA
AAAAAAAAAAAAAAA
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