FC875267

Overview
NameFC875267
Unique NameFC875267
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length678
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC875267 vs. ExPASy Swiss-Prot
Match: NAC66_ARATH (NAC domain-containing protein 66 OS=Arabidopsis thaliana GN=NAC066 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.201e-12
Identity = 41/132 (31.06%), Postives = 65/132 (49.24%), Query Frame = 2
Query:  119 GFRFYPTDEQIILLLTMKRRDPAGFSVRTIKEIDLYSFEPWELPCHSEI-QSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIKRKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENS 511
            GFRF+PT+E+++     K+       +  I +IDL   EPW++    +I  + +  WYF+     K     R  R T  G+WK TGR   I      + IG +K L F +   A    K++W++HE  ++ S
Sbjct:   14 GFRFHPTEEELLKYYLRKKISNIKIDLDVIPDIDLNKLEPWDIQEMCKIGTTPQNDWYFYSHKDKKYPTGTRTNRATTVGFWKATGRDKTIYT--NGDRIGMRKTLVFYK-GRAPHGQKSDWIMHEYRLDES 142          
BLAST of FC875267 vs. ExPASy Swiss-Prot
Match: NAC68_ARATH (NAC domain-containing protein 68 OS=Arabidopsis thaliana GN=NAC68 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.459e-12
Identity = 48/140 (34.29%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  104 MDSLVGFRFYPTDEQIIL-LLTMKRRDPAGFSVRTIKEIDLYSFEPW-ELPCHSEIQSEEEVWYFFCEPCYKNAESKRVRRRTKEGYWKKTGRGSNIK-RKYKTEVIGTKKILSFSRDDAAAEKDKTEWVIHEIAVENSP 514
            M  L+G+RF PT E++I   L  K           I EI++ S +P  +LP  + IQSE+  WYFF    Y N    +++R T  G+WK TG    I+ ++    VIG KK L +  +  +    +T WV+HE  +   P
Sbjct:    2 MKGLIGYRFSPTGEEVINHYLKNKLLGKYWLVDEAISEINILSHKPSKDLPKLARIQSEDLEWYFFSPIEYTNPNKMKMKRTTGSGFWKPTGVDREIRDKRGNGVVIGIKKTLVY-HEGKSPHGVRTPWVMHEYHITCLP 140          
The following BLAST results are available for this feature:
BLAST of FC875267 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
NAC66_ARATH3.201e-1231.06NAC domain-containing protein 66 OS=Arabidopsis th... [more]
NAC68_ARATH5.459e-1234.29NAC domain-containing protein 68 OS=Arabidopsis th... [more]

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Properties
Property NameValue
Genbank descriptionC31402A11EF CTVClemen1 Citrus clementina cDNA clone C31402A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875267 ID=FC875267; Name=FC875267; organism=Citrus clementina; type=EST; length=678bp
GACTGGCTCTTTTAAGATTTTGCTGACCAAATTGGAAAGAAGAAGCTCTT
ACTCTCTCATTCTTGTTCTACGTTTCTCCTGCTGGGTGTTGAATCAGAAA
CCAATGGACAGTCTCGTGGGGTTCAGATTCTATCCAACTGATGAACAAAT
TATTCTTCTACTGACGATGAAGAGACGTGACCCTGCAGGTTTCTCCGTCC
GTACGATCAAGGAAATCGATCTCTACAGCTTTGAGCCCTGGGAGCTACCC
TGCCATTCTGAGATTCAGTCTGAGGAAGAAGTGTGGTACTTTTTCTGTGA
ACCTTGTTACAAAAATGCCGAGAGTAAACGGGTACGTAGAAGAACAAAGG
AAGGCTATTGGAAAAAGACTGGCAGAGGTTCTAACATCAAGCGCAAATAC
AAAACTGAGGTGATTGGTACGAAGAAGATTTTGTCTTTTTCCCGCGATGA
TGCTGCTGCCGAGAAAGATAAGACTGAGTGGGTTATACACGAGATAGCTG
TTGAAAATAGCCCTGACTTTGAGGTATTAGCCTCTGTTTTAGAACTGCAT
ATGTGTTGTGAAATTGTCTGTTTATTTTCTTGAAAAATAATTGTAAAATA
CTCTGTTCCTGTTATTGCAGAAGGATTTTGTTGTGTGTCGCCTTGAAAGA
AACGGGAGAAGAGACGCTTGGTGTTGTT
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