FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_HUMAN (Aminomethyltransferase, mitochondrial OS=Homo sapiens GN=AMT PE=1 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 6.176e-37
Identity = 73/150 (48.67%), Postives = 103/150 (68.67%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSL 662
            E L++T L+DFH+A+GGKMV FAGWS+P+QY+DS  +S L+ RQ+ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG +DD ++T   + H+Y+V NAGC +KDLA ++  ++    +G DV   + D   L
Sbjct:   31 EVLRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHTDSHLHTRQHCSLFDVSHMLQTKILGSDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGILDDLIVTNTSEGHLYVVSNAGCWEKDLALMQDKVRELQNQGRDVGLEVLDNALL 180          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CANFA (Aminomethyltransferase, mitochondrial OS=Canis familiaris GN=AMT PE=3 SV=1)

HSP 1 Score: 150.984 bits (380), Expect = 5.228e-36
Identity = 72/148 (48.65%), Postives = 102/148 (68.92%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSL 662
            L++T L+DFH+A+GGKMV FAGWS+P+QY+DS ++S L+ R++ SLFDVSHM    + G D V  +E LV+ D+A L P  GTL++FTNE GG  DD ++T   + ++Y+V NAGC DKDLA ++  ++     G DVS  + D   L
Sbjct:   33 LRRTPLYDFHLAHGGKMVAFAGWSLPVQYRDSHVDSHLHTRRHCSLFDVSHMLQTKILGCDRVKLMESLVVGDIAELRPNQGTLSLFTNEAGGIEDDLIVTSTSEGYLYVVSNAGCWDKDLALMQGKVRELQNMGSDVSLEVVDNALL 180          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_DICDI (Aminomethyltransferase, mitochondrial OS=Dictyostelium discoideum GN=gcvT PE=3 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.389e-35
Identity = 78/161 (48.45%), Postives = 105/161 (65.22%), Query Frame = 3
Query:  189 RRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKG--GDVSWHIHDERSLL 665
            +R+F+S  E LKKTAL++ H   G KMVPF GW MP+QY   +M+  L+ R+   LFDVSHM  L + GKD V F E +V+AD+  L  G   L+VFTNE GG IDD++IT    D +Y+VVNAGC DKD++HI   +K F +     DVS  + ++ SL+
Sbjct:   15 KRYFSSSNE-LKKTALNELHKELGAKMVPFCGWEMPVQYPAGVMKEHLHVRKESGLFDVSHMGQLRIHGKDRVKFFESIVVADLQALPTGHSKLSVFTNEKGGIIDDTMITNA-GDSLYVVVNAGCADKDISHINEKIKEFKSVNPTHDVSMQLLEDLSLI 173          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YEAST (Aminomethyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=GCV1 PE=1 SV=2)

HSP 1 Score: 124.79 bits (312), Expect = 4.012e-28
Identity = 73/165 (44.24%), Postives = 96/165 (58.18%), Query Frame = 3
Query:  177 KTIARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSI-MESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDH-IYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            K I  + F S    LKKTALHD HV+ GG MVP+AG+SMP+ YK    +ES    R N  LFDVSHM    L G   V FL+++   D   L  G+GTL+V  N  GG +DD++ITK  DD+  Y+V NAGC ++D       +++ +    D  W I + RSLL
Sbjct:    5 KKIVFKRFNS---TLKKTALHDLHVSLGGTMVPYAGYSMPVLYKGQTHIESHNWTRTNAGLFDVSHMLQSKLSGPHSVKFLQRVTPTDFNALPVGSGTLSVLLNPQGGVVDDTIITKENDDNEFYIVTNAGCAERDTEFFHDELQNGSTL--DCQWKIIEGRSLL 164          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SCHPO (Probable aminomethyltransferase, mitochondrial OS=Schizosaccharomyces pombe GN=gcv1 PE=2 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.434e-25
Identity = 56/144 (38.89%), Postives = 93/144 (64.58%), Query Frame = 3
Query:  183 IARRHFASDAENLKKTALHDFHVANGGKMVPFAGWSMPIQYK-DSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            + R+   + + +LK+T L+D H+  G  +VPFAG+SMP+QYK  +I  S    R++  LFDVSHM    ++G++   +LE +  + +  L P   TL+ FTNE GG IDD++I+K  ++  Y+V NA C +KD A+++ H++++
Sbjct:   10 LKRQSSTAASSSLKRTPLYDLHLKEGATIVPFAGFSMPVQYKGQTISASHKWTREHSGLFDVSHMVQWFVRGENATAYLESITPSSLKELKPFHSTLSAFTNETGGIIDDTIISKQDENTYYIVTNAACSEKDEANLKKHIENW 153          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEMA (Aminomethyltransferase OS=Thermotoga maritima GN=gcvT PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.336e-23
Identity = 58/139 (41.73%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFDVEVSNIS 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THESQ (Aminomethyltransferase OS=Thermotoga sp. (strain RQ2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 57/139 (41.01%), Postives = 82/139 (58.99%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  + + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F  +  ++S
Sbjct:    1 MKRTPLFEKHVELGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNNFSSLPDGKALYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNFNVEVSNIS 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEP1 (Aminomethyltransferase OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=gcvT PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.886e-23
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            +K+T L + HV  G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM    +KG + V F++ L+  D + L  G    +V  NENGG IDD V+ KV  D   +VVNA   +KD   I++H K+F
Sbjct:    1 MKRTPLFEKHVGLGAKMVDFAGWEMPLYYT-SIFEEVMAVRKSVGMFDVSHMGEFLVKGPEAVSFIDFLITNDFSSLPDGKAIYSVMCNENGGIIDDLVVYKVSPDEALMVVNAANIEKDFNWIKSHSKNF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THENN (Aminomethyltransferase OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.519e-22
Identity = 58/149 (38.93%), Postives = 88/149 (59.06%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            +K+T L++ HVA G KMV FAGW MP+ Y  SI E  +  R++  +FDVSHM  + ++G++ V F+  LV  D + +  G    TV  NE GG +DD V+ ++  +   +VVNA   +KD   I+ H K+F  +  +VS    DE +L+
Sbjct:    1 MKRTPLYERHVALGAKMVDFAGWIMPLYYS-SIFEEVMAVRKSVGVFDVSHMGEIVVEGQETVDFVNFLVTNDFSAIPEGKAMYTVMCNETGGIVDDLVVYRISHEKAIMVVNAANIEKDYEWIKVHAKNFNVEVRNVS----DETALV 144          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_CARHZ (Aminomethyltransferase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=gcvT PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.329e-22
Identity = 54/126 (42.86%), Postives = 74/126 (58.73%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 590
            ENLK+T L++ H+  G KMVPF GW MP+QY   I+E  +  R +  +FDVSHM  + + GK    F+  L+  DV+ L  G    T     +GG++DD +  K   +   LVVNA  +DKDLAHI
Sbjct:    2 ENLKRTPLYEEHIKLGAKMVPFGGWEMPVQYT-GILEEHMAVRTDVGMFDVSHMGEIEITGKQAERFVNYLITNDVSRLNSGDVIYTTMCYPDGGTVDDLLAYKYSTERYLLVVNAANKDKDLAHI 126          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_HUMAN6.176e-3748.67Aminomethyltransferase, mitochondrial OS=Homo sapi... [more]
GCST_CANFA5.228e-3648.65Aminomethyltransferase, mitochondrial OS=Canis fam... [more]
GCST_DICDI3.389e-3548.45Aminomethyltransferase, mitochondrial OS=Dictyoste... [more]
GCST_YEAST4.012e-2844.24Aminomethyltransferase, mitochondrial OS=Saccharom... [more]
GCST_SCHPO2.434e-2538.89Probable aminomethyltransferase, mitochondrial OS=... [more]
GCST_THEMA1.336e-2341.73Aminomethyltransferase OS=Thermotoga maritima GN=g... [more]
GCST_THESQ3.886e-2341.01Aminomethyltransferase OS=Thermotoga sp. (strain R... [more]
GCST_THEP13.886e-2343.51Aminomethyltransferase OS=Thermotoga petrophila (s... [more]
GCST_THENN2.519e-2238.93Aminomethyltransferase OS=Thermotoga neapolitana (... [more]
GCST_CARHZ7.329e-2242.86Aminomethyltransferase OS=Carboxydothermus hydroge... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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