FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_DESRM (Aminomethyltransferase OS=Desulfotomaculum reducens (strain MI-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.860e-20
Identity = 49/122 (40.16%), Postives = 71/122 (58.20%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            + LK+T L++ H+A G KMV F GW MP+QY+  I E     R    LFDVSHM  + + G     F+++LV  D++ L PG    +   N  GG++DD ++ +++D    LVVNA   DKD
Sbjct:    2 QELKRTPLYNIHLAAGAKMVEFGGWLMPVQYEGIIAEHQA-VRSAAGLFDVSHMGEIQISGPTAREFVQRLVTNDISRLKPGCAIYSPMCNPQGGTVDDLLVYQLEDQQYLLVVNASNTDKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAES (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    + S
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTVDVSNTS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAEQ (Aminomethyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 53/140 (37.86%), Postives = 77/140 (55.00%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +LKKT L+  +V +G K+V F GW+MP+Q+  SI E     R N  LFDVSHM  + + GKD   F++ ++  D   L       +   N+ GG IDD V  K+ ++H  L+VNA   +KD   I+ H  +FT    + S
Sbjct:    4 DLKKTPLYQNYVDSGAKIVEFGGWAMPVQFS-SIKEEHNAVRYNVGLFDVSHMGEIEISGKDAEQFIQYILSNDTNLLTNDKAMYSALCNDEGGIIDDLVTYKLNENHYLLIVNAANTNKDYQWIKKHSSNFTVDVSNTS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_ERWCT (Aminomethyltransferase OS=Erwinia carotovora subsp. atroseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 55/131 (41.98%), Postives = 76/131 (58.02%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+  H+A+G KMV F GW MP+ Y   + E  +  R++  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H  +F
Sbjct:    3 KQTPLYQQHLADGAKMVDFHGWMMPLHYGSQLDEHHI-VRRDAGIFDVSHMTIVDLHGVRTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAAF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BORPA (Aminomethyltransferase OS=Bordetella parapertussis GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            LK+T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++   +   A G DV+
Sbjct:    5 LKRTPLAEEHLAAGARMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGRALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ---RVAAADGFDVA 140          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BORBR (Aminomethyltransferase OS=Bordetella bronchiseptica GN=gcvT PE=3 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 8.959e-20
Identity = 59/140 (42.14%), Postives = 78/140 (55.71%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            LK+T L + H+A G +MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++   +   A G DV+
Sbjct:    5 LKRTPLAEEHLAAGARMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ---RVAAADGFDVA 140          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEP3 (Aminomethyltransferase OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.170e-19
Identity = 49/122 (40.16%), Postives = 72/122 (59.02%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +NLKKT L D +    GK++ FAGW++P+Q++  I E     R    LFDVSHM  +++KG++   FL+ L+  D++ L       T   N NGG +DD ++ K  D+H  LVVNA   +KD
Sbjct:    2 DNLKKTPLFDLYKKYNGKIIDFAGWALPVQFESIISEHEA-VRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKDNQVFYTFMCNYNGGVVDDLLVYKYSDEHFLLVVNAANIEKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_YERE8 (Aminomethyltransferase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 55/131 (41.98%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+D HVA G +MV F GW MP+ Y   I E  +  RQ+  +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  +++D+  LVVN+  R+KDL  I  H + +
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHI-VRQDAGMFDVSHMTIVDLHGARTREFLRYLLANDVAKLTQPGKALYTAMLNASGGVIDDLIVYFLREDYFRLVVNSATREKDLNWIIQHAEPY 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PSEHT (Aminomethyltransferase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 55/123 (44.72%), Postives = 69/123 (56.10%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHI 590
            KT L+  H+  G KMV F GW MPI Y   I E     R +  +FDVSHM  + ++G+    FL+KLV  DVA L  PG    T   NE GG IDD +I    +    LVVN+  R+KDLAH+
Sbjct:    4 KTVLYAKHLEAGAKMVDFHGWEMPINYGSQIEEHNA-VRNDAGMFDVSHMTIVDIQGEQAQAFLQKLVANDVAKLTVPGKALYTPMLNEQGGVIDDLIIYFFSNTSYRLVVNSATREKDLAHL 125          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PECCP (Aminomethyltransferase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.528e-19
Identity = 56/131 (42.75%), Postives = 75/131 (57.25%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            K+T L+  H+A+G KMV F GW MP+ Y   + E  +  R+ G +FDVSHM  + L G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H   F
Sbjct:    3 KQTPLYQQHLADGAKMVDFHGWMMPLHYGSQLDEHHIVRREAG-IFDVSHMTIVDLHGARTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEQHAAPF 132          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_DESRM6.860e-2040.16Aminomethyltransferase OS=Desulfotomaculum reducen... [more]
GCST_STAES8.959e-2037.86Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_STAEQ8.959e-2037.86Aminomethyltransferase OS=Staphylococcus epidermid... [more]
GCST_ERWCT8.959e-2041.98Aminomethyltransferase OS=Erwinia carotovora subsp... [more]
GCST_BORPA8.959e-2042.14Aminomethyltransferase OS=Bordetella parapertussis... [more]
GCST_BORBR8.959e-2042.14Aminomethyltransferase OS=Bordetella bronchiseptic... [more]
GCST_THEP31.170e-1940.16Aminomethyltransferase OS=Thermoanaerobacter pseud... [more]
GCST_YERE81.528e-1941.98Aminomethyltransferase OS=Yersinia enterocolitica ... [more]
GCST_PSEHT1.528e-1944.72Aminomethyltransferase OS=Pseudoalteromonas halopl... [more]
GCST_PECCP1.528e-1942.75Aminomethyltransferase OS=Pectobacterium carotovor... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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