FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_FRATF (Aminomethyltransferase OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.382e-20
Identity = 50/129 (38.76%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L++ H+A   KM+ F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHIAANAKMIDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XYLFT (Aminomethyltransferase OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XYLF2 (Aminomethyltransferase OS=Xylella fastidiosa (strain M23) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHQALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_FRATT (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_FRAT1 (Aminomethyltransferase OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 51/129 (39.53%), Postives = 73/129 (56.59%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R++  +FDVSHM  + ++G +   FL  L+  DVA L           N + G +DD +  KV D+H  +VVNAG R+ D+A    + ++F
Sbjct:    3 KTPLYESHMAANAKMVDFSGWSMPINYGSQIQEHN-NVREDCGIFDVSHMLAVDIQGSEAEKFLRYLLANDVAKLQENKAQYGCMLNHDAGIVDDLITYKVTDEHFRIVVNAGNRESDVAWFNQNAQNF 130          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_FRAP2 (Aminomethyltransferase OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 51/132 (38.64%), Postives = 72/132 (54.55%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            KT L++ H+A   KMV F+GWSMPI Y   I E   N R+N  +FDVSHM  + ++GKD   FL  ++  DVA L  G        N   G +DD +  K+  ++  +VVNAG R+ D+A    + +    K
Sbjct:    3 KTPLYESHLAANAKMVDFSGWSMPINYGSQIQEHN-NVRENCGVFDVSHMLAVDIQGKDAEKFLRHILANDVAKLEAGKAQYGCMLNHEAGIVDDLITYKIDSENFRIVVNAGNRESDVAWFRENSQDLDVK 133          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_COLP3 (Aminomethyltransferase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 60/130 (46.15%), Postives = 71/130 (54.62%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSF 611
            KT LH  H+A+G KMV F GW MPI Y   I E     R +  +FDVSHM  + ++G D   FL +LVI DVA LA PG    T   NE GG IDD +I    D    LVVN+  R KDLA +      F
Sbjct:    4 KTVLHAKHLASGAKMVDFFGWDMPINYGSQIEEHHA-VRTDAGMFDVSHMTIVDVQGADAKAFLRRLVINDVAKLATPGKALYTGMLNEEGGVIDDLIIYFFSDTDYRLVVNSATRVKDLAWMTKQSTGF 132          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACLD (Aminomethyltransferase OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=gcvT PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.805e-20
Identity = 60/150 (40.00%), Postives = 84/150 (56.00%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS-WHIHDERSLL 665
            LK+T L D +   GGK + F GW +P+Q+  SI E     R    LFDVSHM  + + G D +PFL+KL+  DV+ L  G    T    E+GG+IDD ++ K   +   LV+NA   DKD+  +  H+K      GDVS  ++ DE +LL
Sbjct:    2 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEITGTDSLPFLQKLLTNDVSTLKEGGAQYTAMCYEDGGTIDDLLVYKKAANVYMLVINAANIDKDVDWMNKHIK------GDVSVRNVSDEIALL 144          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XYLFM (Aminomethyltransferase OS=Xylella fastidiosa (strain M12) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_XYLFA (Aminomethyltransferase OS=Xylella fastidiosa GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 54/135 (40.00%), Postives = 74/135 (54.81%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            +KKT L+D H A G KMV F+GW MPI Y   I E   + R+N  +FDVSHM  + L G    P L +L+   V  L  PG    +   N  GG IDD ++  +++D+   +VNA  R+KDLA I     +F  +
Sbjct:    2 IKKTILNDTHRALGAKMVDFSGWEMPIHYGSQIDEHH-HVRRNAGIFDVSHMTVIDLHGTQVRPLLRRLLANSVDKLKVPGKALYSCMLNPQGGVIDDLIVYYLREDYFRFIVNAATREKDLAWINTQASAFNVR 135          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_FRATF1.382e-2038.76Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_XYLFT1.805e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLF21.805e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_FRATT1.805e-2039.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAT11.805e-2039.53Aminomethyltransferase OS=Francisella tularensis s... [more]
GCST_FRAP21.805e-2038.64Aminomethyltransferase OS=Francisella philomiragia... [more]
GCST_COLP31.805e-2046.15Aminomethyltransferase OS=Colwellia psychrerythrae... [more]
GCST_BACLD1.805e-2040.00Aminomethyltransferase OS=Bacillus licheniformis (... [more]
GCST_XYLFM2.358e-2040.00Aminomethyltransferase OS=Xylella fastidiosa (stra... [more]
GCST_XYLFA2.358e-2040.00Aminomethyltransferase OS=Xylella fastidiosa GN=gc... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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