FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACHD (Aminomethyltransferase OS=Bacillus halodurans GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.358e-20
Identity = 51/127 (40.16%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            LKKT L D +   GGK++ F GW++P+Q+  SI E     R    LFDVSHM  + + G   + +L++LV  DV+ +  G    T    ENGG++DD +I +  +D   LV+NA   DKD+A +E H
Sbjct:    4 LKKTPLFDLYEQYGGKVIDFGGWALPVQFS-SIKEEHEAVRTKAGLFDVSHMGEVEVTGAQALNYLQRLVTNDVSKIKDGQAQYTAMCYENGGTVDDLLIYRRSEDQYLLVINAANIDKDIAWMEKH 129          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAB (Aminomethyltransferase OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAARYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGVIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SERP5 (Aminomethyltransferase OS=Serratia proteamaculans (strain 568) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 57/127 (44.88%), Postives = 74/127 (58.27%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            K+T L+D HVA G +MV F GW MP+ Y   I E     RQ+  +FDVSHM  + L+G     FL  L+  DVA L  PG    T   N +GG IDD ++  + +D+  LVVN+  R+KDLA IE H
Sbjct:    3 KQTPLYDQHVACGARMVDFHGWMMPLHYGSQIDEHHA-VRQDAGMFDVSHMTIVDLRGARTREFLRYLLANDVAKLTQPGKALYTGMLNASGGVIDDLIVYFLTEDYFRLVVNSATREKDLAWIEEH 128          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_NATTJ (Aminomethyltransferase OS=Natranaerobius thermophilus (strain ATCC BAA-1301 / DSM 18059 / JW/NM-WN-LF) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.079e-20
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 593
            +KT L+D H   GGK++ F GW +P+Q+   I++  +  R+   LFDVSHM  + ++G   + +L+K+V  DVA L PG    T    ENGG++DD +I K+ ++   L+VNA   DKD   ++
Sbjct:    5 QKTPLYDIHKERGGKIIDFGGWYLPVQFT-GIIDEVMTTRKEAGLFDVSHMGEIIVEGPKALEYLQKMVPNDVARLKPGKILYTPMCYENGGTVDDFLIYKMDENKFLLIVNAANTDKDFEWLQ 127          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THEPX (Aminomethyltransferase OS=Thermoanaerobacter sp. (strain X514) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 49/122 (40.16%), Postives = 73/122 (59.84%), Query Frame = 3
Query:  213 ENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKD 578
            +NLKKT L + +    GK++ FAGW++P+Q++  I E     R    LFDVSHM  +++KG++   FL+ L+  D++ L       T   N NGG +DD ++ K  D+H YLVVNA   +KD
Sbjct:    2 DNLKKTPLFELYKKYNGKIIDFAGWALPVQFESIISEHEA-VRNAAGLFDVSHMGEITVKGREAFNFLQNLITNDLSKLKGNQVLYTFMCNYNGGVVDDLLVYKYSDEHFYLVVNAANIEKD 122          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAW (Aminomethyltransferase OS=Staphylococcus aureus (strain MW2) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAT (Aminomethyltransferase OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAS (Aminomethyltransferase OS=Staphylococcus aureus (strain MSSA476) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAR (Aminomethyltransferase OS=Staphylococcus aureus (strain MRSA252) GN=gcvT PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_STAAN (Aminomethyltransferase OS=Staphylococcus aureus (strain N315) GN=gcvT PE=1 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.021e-20
Identity = 57/142 (40.14%), Postives = 77/142 (54.23%), Query Frame = 3
Query:  210 AENLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            + +LK+T L+  +V  G K+V F GW+MP+Q+  SI E     R    LFDVSHM  + + GKD   F++ L+  D   L       T   NE GG IDD VI K+ DD+  LVVNA   +KD   I  H + F  +  +VS
Sbjct:    2 SSDLKQTPLYQNYVDRGAKIVEFGGWAMPVQFS-SIKEEHNAVRYEIGLFDVSHMGEIEVTGKDASQFVQYLLSNDTDNLTTSKALYTALCNEEGGIIDDLVIYKLADDNYLLVVNAANTEKDFNWILKHKEKFDVEVQNVS 142          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_BACHD2.358e-2040.16Aminomethyltransferase OS=Bacillus halodurans GN=g... [more]
GCST_STAAB3.079e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_SERP53.079e-2044.88Aminomethyltransferase OS=Serratia proteamaculans ... [more]
GCST_NATTJ3.079e-2038.71Aminomethyltransferase OS=Natranaerobius thermophi... [more]
GCST_THEPX4.021e-2040.16Aminomethyltransferase OS=Thermoanaerobacter sp. (... [more]
GCST_STAAW4.021e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAT4.021e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAS4.021e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAR4.021e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]
GCST_STAAN4.021e-2040.14Aminomethyltransferase OS=Staphylococcus aureus (s... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
back to top