FC875475

Overview
NameFC875475
Unique NameFC875475
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length665
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig14430 contig Ccv1_Contig14430:35..699. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_THET8 (Aminomethyltransferase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 52/139 (37.41%), Postives = 80/139 (57.55%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVS 635
            +KKT L++ H+  G +MV FAG+ +P+QY  SI+E  L  R+   +FDVSHM    ++GK+ + FL+     D   L  G    ++  NE GG +DD  + ++ ++   +VVNA    KDLAH++A  K F  +  D S
Sbjct:    1 MKKTPLYEAHLRLGARMVDFAGYLLPLQYT-SIVEEHLAVRRAVGVFDVSHMGEFLVRGKEALAFLQWATANDAGKLKVGRAQYSMLPNERGGVVDDIYLYRLGEEEYLMVVNAANIAKDLAHLQALAKGFRVELEDAS 138          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_GEOKA (Aminomethyltransferase OS=Geobacillus kaustophilus GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 50/129 (38.76%), Postives = 74/129 (57.36%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            LK+T L   +   G K + F GW MP+Q+  SI E     R    LFDVSHM  + ++G+  + FL+KL+  DVA L PG    T+   E+GG++DD +I +  ++   LVVNA   +KD A +  H++
Sbjct:    2 LKRTPLFSVYARCGAKTIEFGGWEMPVQFS-SIKEEHEAVRTRAGLFDVSHMGEIVVRGRGSLAFLQKLMTNDVAKLRPGRAQYTLMCYEDGGTVDDLLIYQKGENDYLLVVNAANTEKDFAWLSGHVE 129          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BORPE (Aminomethyltransferase OS=Bordetella pertussis GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 55/126 (43.65%), Postives = 71/126 (56.35%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIE 593
            LK+T L + H+A G  MV F GW MP+ Y  S +E     RQ+  +FDVSHM  + + G D   FL +LV  DVA LA PG    +   N  GG IDD +I     D   +VVNAG  DKD+A ++
Sbjct:    5 LKRTPLAEEHLAAGACMVDFGGWDMPLAY-GSQLEEHHAVRQDAGMFDVSHMLNVDVGGADATAFLRRLVANDVARLATPGKALYSCMLNPQGGIIDDLIIYYFAPDQWRVVVNAGTADKDIAWMQ 129          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_BACSU (Aminomethyltransferase OS=Bacillus subtilis GN=gcvT PE=1 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 4.446e-19
Identity = 49/127 (38.58%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            LK+T L D +   GGK + F GW +P+Q+  SI +     R    LFDVSHM  + + G D + FL++L+  DV+ L PG    T     +GG++DD +I +  ++   LV+NA   DKDLA ++ H
Sbjct:    2 LKRTPLFDLYKEYGGKTIDFGGWELPVQFS-SIKKEHEAVRTAAGLFDVSHMGEVEVSGNDSLSFLQRLMTNDVSALTPGRAQYTAMCYPDGGTVDDLLIYQKGENRYLLVINASNIDKDLAWMKEH 127          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEPW (Aminomethyltransferase OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTQYRIVVNSATREKDLAWINEQVKGFSVE 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_SHEPA (Aminomethyltransferase OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 54/133 (40.60%), Postives = 72/133 (54.14%), Query Frame = 3
Query:  225 KTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGL-APGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAK 620
            KT L + H+ + GKMV F GW MP+ Y   I E     RQ+  +FDVSHM  + + G D   FL KL+  DVA L  PG        + NGG IDD +   + D    +VVN+  R+KDLA I   +K F+ +
Sbjct:    4 KTVLFNKHLESNGKMVDFHGWDMPLNYGSQIEEHHA-VRQDAGMFDVSHMTVVDVIGDDACAFLRKLLANDVAKLKVPGKALYGGMLDHNGGVIDDLITYYLSDTEYRIVVNSATREKDLAWINEQVKGFSVE 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROMH (Aminomethyltransferase OS=Proteus mirabilis (strain HI4320) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 59/149 (39.60%), Postives = 78/149 (52.35%), Query Frame = 3
Query:  222 KKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLA-PGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAHMKSFTAKGGDVSWHIHDERSLL 665
            K+T L+D HVA G +MV F GW MP+ Y   I E   N RQ+  +FDVSHM  + L G     FL  L+  DVA L   G    T   N +GG IDD ++    +    LVVN+  R+KDLA I  H K +      V   + D+ +L+
Sbjct:    3 KQTPLYDEHVACGARMVDFHGWMMPLHYGSQIDEHH-NVRQDAGMFDVSHMTIVDLHGPQVKDFLRYLLANDVAKLTEKGKALYTGMLNASGGVIDDLIVYYFDETFYRLVVNSATREKDLAWITEHAKDYV-----VDIQVRDDLALI 145          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROM3 (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 51/135 (37.78%), Postives = 73/135 (54.07%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            NL+ T LHD     GG+MVPFAGW MP+Q+   + E     RQ   +FD+SHM  L L+G +    L+ LV  D+  + PG    TV  NE GG +DD V+      K     + +V+NA C + D   ++ H++
Sbjct:    2 NLQHTPLHDLCRDAGGRMVPFAGWDMPVQFSGLLQEHQA-VRQQVGMFDISHMGVLRLEGTNPKDTLQALVPTDLNRIGPGEACYTVLLNETGGILDDLVVYDLGTNKQDSQSLLIVINAACSETDTIWLKQHLQ 135          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_FLAPJ (Aminomethyltransferase OS=Flavobacterium psychrophilum (strain JIP02/86 / ATCC 49511) GN=gcvT PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.807e-19
Identity = 50/127 (39.37%), Postives = 73/127 (57.48%), Query Frame = 3
Query:  219 LKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVITKVKDDHIYLVVNAGCRDKDLAHIEAH 599
            +K TAL + H + G KMVPFAG++MP+QY+    E  +  R    +FDVSHM    LKG++ +  ++K+   D + L  G    +   N  GG +DD +I K+ D+H  LVVNA   +KD   I +H
Sbjct:    1 MKNTALTNIHESLGAKMVPFAGYNMPVQYEGVNAEHEI-VRTGVGVFDVSHMGEFFLKGENALALIQKVTSNDASKLVDGKAQYSCLPNNEGGIVDDLIIYKIADNHYMLVVNASNIEKDWNWISSH 126          
BLAST of FC875475 vs. ExPASy Swiss-Prot
Match: GCST_PROMM (Aminomethyltransferase OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvT PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.584e-19
Identity = 52/135 (38.52%), Postives = 72/135 (53.33%), Query Frame = 3
Query:  216 NLKKTALHDFHVANGGKMVPFAGWSMPIQYKDSIMESTLNCRQNGSLFDVSHMCGLSLKGKDCVPFLEKLVIADVAGLAPGTGTLTVFTNENGGSIDDSVI-----TKVKDDHIYLVVNAGCRDKDLAHIEAHMK 605
            NL+ T LHD     GG+MVPFAGW MP+Q+   + E     RQ   +FD+SHM  L L+G +    L+ LV  D+  + PG    TV  NE GG +DD VI      K     + +V+NA C   D   ++ H++
Sbjct:    2 NLQHTPLHDLCRDAGGRMVPFAGWDMPVQFSGLLQEHQA-VRQQVGMFDISHMGVLRLEGTNPKDHLQALVPTDLNRIGPGEACYTVLLNETGGILDDLVIYDLGTNKQDSQSLLIVINAACSKTDTIWLKQHLQ 135          
The following BLAST results are available for this feature:
BLAST of FC875475 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 328
Match NameE-valueIdentityDescription
GCST_THET84.446e-1937.41Aminomethyltransferase OS=Thermus thermophilus (st... [more]
GCST_GEOKA4.446e-1938.76Aminomethyltransferase OS=Geobacillus kaustophilus... [more]
GCST_BORPE4.446e-1943.65Aminomethyltransferase OS=Bordetella pertussis GN=... [more]
GCST_BACSU4.446e-1938.58Aminomethyltransferase OS=Bacillus subtilis GN=gcv... [more]
GCST_SHEPW5.807e-1940.60Aminomethyltransferase OS=Shewanella piezotolerans... [more]
GCST_SHEPA5.807e-1940.60Aminomethyltransferase OS=Shewanella pealeana (str... [more]
GCST_PROMH5.807e-1939.60Aminomethyltransferase OS=Proteus mirabilis (strai... [more]
GCST_PROM35.807e-1937.78Aminomethyltransferase OS=Prochlorococcus marinus ... [more]
GCST_FLAPJ5.807e-1939.37Aminomethyltransferase OS=Flavobacterium psychroph... [more]
GCST_PROMM7.584e-1938.52Aminomethyltransferase OS=Prochlorococcus marinus ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D02EF CTVClemen1 Citrus clementina cDNA clone C31404D02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875475 ID=FC875475; Name=FC875475; organism=Citrus clementina; type=EST; length=665bp
GGATCCACCGCTCTCTCTGTGTATGCCTGGAGATGCTCTTTCGGGCTCCC
AGATTTGCTTGTTTCTGAGATAAAGAAGAAAACCCCATCTCTATATTTAT
ATCGAATAAAATGAGAGGAGGGAGTCTGTGGCAGCTTGGACAATCGATCA
CCCGTCGTTTGGCTCTGGCTGATAAGAAGACTATAGCTCGTAGACACTTT
GCCTCAGATGCTGAAAACCTGAAAAAAACTGCCCTTCATGACTTTCATGT
GGCTAATGGTGGAAAGATGGTTCCATTTGCTGGATGGAGCATGCCTATTC
AGTACAAGGACTCAATTATGGAATCTACTTTGAATTGTCGGCAGAATGGT
AGTCTCTTTGATGTCTCCCATATGTGTGGGCTGAGCCTCAAAGGGAAGGA
TTGCGTCCCTTTCCTTGAGAAGCTTGTGATCGCTGATGTTGCTGGACTTG
CCCCAGGAACTGGGACTCTTACAGTCTTTACAAATGAAAATGGGGGTTCA
ATTGATGATTCGGTTATTACCAAGGTGAAGGATGATCACATATACCTTGT
TGTGAATGCTGGCTGCAGGGATAAGGATCTTGCTCACATTGAGGCACATA
TGAAGAGTTTCACAGCCAAAGGTGGGGATGTCTCGTGGCACATCCATGAT
GAGAGATCTCTTCTT
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