FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_XENLA (78 kDa glucose-regulated protein OS=Xenopus laevis GN=hspa5 PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.406e-82
Identity = 159/233 (68.24%), Postives = 187/233 (80.26%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++D SVQ D+K  PFKVI     KP I V+   + K FA EEIS+MVL+KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K   D+  + RA+++LR
Sbjct:   62 RITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKYLPFKVIEKKT-KPYIEVDIGDQMKTFAPEEISAMVLVKMKETAEAYLGRKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKKE---GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRADKRAVQKLR 290          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: BIP_SOLLC (Luminal-binding protein OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 303.908 bits (777), Expect = 5.406e-82
Identity = 158/233 (67.81%), Postives = 187/233 (80.26%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPS+V FTD ERLIG+AAKN  A+NP  T+FD KRLIGR+F D  VQ DMKL P+K+++    KP I V  K GE K F+ EEIS+M+L KM+E AEA+LG TIK+AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K   DIS + RAL +LR
Sbjct:   68 RITPSWVAFTDNERLIGEAAKNLAAVNPERTIFDVKRLIGRKFEDKEVQRDMKLVPYKIVSKDG-KPYIQVKIKDGEVKVFSPEEISAMILTKMKETAEAFLGKTIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLR 296          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP76_YEAST (Heat shock protein SSB2 OS=Saccharomyces cerevisiae GN=SSB2 PE=1 SV=2)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 158/234 (67.52%), Postives = 185/234 (79.06%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            R TPS+V FT  ERLIGDAAKNQ A+NP NTVFDAKRLIGRRF D SVQ DMK WPFKVI    + P+I V Y  E K F+ +EIS+MVL KM+EIAEA +G  ++ AV+TVPAYFND+QRQATKDAG I+GLNV+RIINEPTAAAIAYGL     S  E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA
Sbjct:   38 RVTPSFVAFTPQERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGN-PVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYGLG-AGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTA 269          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP75_YEAST (Heat shock protein SSB1 OS=Saccharomyces cerevisiae GN=SSB1 PE=1 SV=3)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 158/234 (67.52%), Postives = 185/234 (79.06%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            R TPS+V FT  ERLIGDAAKNQ A+NP NTVFDAKRLIGRRF D SVQ DMK WPFKVI    + P+I V Y  E K F+ +EIS+MVL KM+EIAEA +G  ++ AV+TVPAYFND+QRQATKDAG I+GLNV+RIINEPTAAAIAYGL     S  E++VLIFDLGGGTFDVSLL I  G++ VK+T+G+THLGG+DFD  ++ HF  EFK+K   DIS + RALRRLRTA
Sbjct:   38 RVTPSFVAFTPEERLIGDAAKNQAALNPRNTVFDAKRLIGRRFDDESVQKDMKTWPFKVIDVDGN-PVIEVQYLEETKTFSPQEISAMVLTKMKEIAEAKIGKKVEKAVITVPAYFNDAQRQATKDAGAISGLNVLRIINEPTAAAIAYGLG-AGKSEKERHVLIFDLGGGTFDVSLLHIAGGVYTVKSTSGNTHLGGQDFDTNLLEHFKAEFKKKTGLDISDDARALRRLRTA 269          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_NEUCR (78 kDa glucose-regulated protein homolog OS=Neurospora crassa GN=grp78 PE=3 SV=3)

HSP 1 Score: 303.523 bits (776), Expect = 7.061e-82
Identity = 148/232 (63.79%), Postives = 187/232 (80.60%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FTD ERL+GDAAKNQ A NP  T+FD KRLIGR+FSD  VQ D+K +P+KV++   DKP++ V  KGEEK F  EEIS+M+L KM+E AE YLG  + +AVVTVPAYFND+QRQATKDAG+IAGLNV+RI+NEPTAAAIAYGLDK      E+ ++++DLGGGTFDVSLL+IE+G+FEV +TAGDTHLGGEDFD R++NHF + F +K   D++ + +A+ +L+
Sbjct:   71 RITPSYVAFTDEERLVGDAAKNQAAANPHRTIFDIKRLIGRKFSDKDVQNDIKHFPYKVVSKD-DKPVVKVEVKGEEKTFTPEEISAMILGKMKETAEGYLGKKVTHAVVTVPAYFNDNQRQATKDAGMIAGLNVLRIVNEPTAAAIAYGLDKTGE---ERQIIVYDLGGGTFDVSLLSIEQGVFEVLSTAGDTHLGGEDFDQRIINHFAKLFNKKHGVDVTKDAKAMGKLK 298          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: BIP2_MAIZE (Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=1 SV=3)

HSP 1 Score: 303.138 bits (775), Expect = 9.222e-82
Identity = 158/233 (67.81%), Postives = 187/233 (80.26%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPS+V FTD+ERLIG+AAKNQ A+NP  T+FD KRLIGR+F+D  VQ DMKL P+K+I     KP I V  K GE K F+ EEIS+M+L KM++ AEAYLG  I +AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K   DIS + RAL +LR
Sbjct:   65 RITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFADKEVQRDMKLVPYKII-NKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLR 293          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: HSP7C_CAEBR (Heat shock 70 kDa protein C OS=Caenorhabditis briggsae GN=hsp-3 PE=3 SV=2)

HSP 1 Score: 302.753 bits (774), Expect = 1.204e-81
Identity = 150/234 (64.10%), Postives = 191/234 (81.62%), Query Frame = 1
Query:    1 RTTPSYVGFTDTE--RLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV F+  +  RLIGDAAKNQ+ +NP NT+FDAKRLIGR ++D +VQ D+K WPFKV+   ++KP + V    + KQF  EE+S+MVL+KM+EIAE+YLG  +K+AVVTVPAYFND+QRQATKDAG IAGLNV+RIINEPTAAAIAYGLDKK    GE+N+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++ +K+K   D+  + RA+++LR
Sbjct:   65 RITPSYVAFSGEQGDRLIGDAAKNQLTINPENTIFDAKRLIGRDYNDKTVQADIKHWPFKVL-DKSNKPSVEVKVGADNKQFTPEEVSAMVLVKMKEIAESYLGKEVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKD---GERNILVFDLGGGTFDVSMLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIKLYKKKSGKDLRKDKRAVQKLR 294          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_APLCA (78 kDa glucose-regulated protein OS=Aplysia californica PE=1 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.204e-81
Identity = 159/233 (68.24%), Postives = 184/233 (78.97%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT D ERLIGDAAKNQ+  NP NT+FD KRLIGR F D SVQ D+K +PFKV     +KP I       ++ FA EEIS+MVL KMR+IAE YLG  I NAVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVSLLTI+ G+FEV +T GDTHLGGEDFD R++ HF++ +K+KK  DI  + RA+++LR
Sbjct:   70 RITPSYVAFTADGERLIGDAAKNQLTSNPENTIFDVKRLIGRTFDDKSVQHDIKFYPFKV-TNANNKPHIQAATGEGDRSFAPEEISAMVLSKMRDIAEEYLGKKITNAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKKE---GEKNILVFDLGGGTFDVSLLTIDNGVFEVVSTNGDTHLGGEDFDQRVMEHFIKLYKKKKGKDIRKDNRAVQKLR 298          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: BIP3_MAIZE (Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.204e-81
Identity = 158/233 (67.81%), Postives = 186/233 (79.83%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPS+V FTD+ERLIG+AAKNQ A+NP  T+FD KRLIGR+F D  VQ DMKL P+K+I     KP I V  K GE K F+ EEIS+M+L KM++ AEAYLG  I +AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K   DIS + RAL +LR
Sbjct:   65 RITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFQDKEVQRDMKLVPYKII-NKDGKPYIQVKIKDGENKVFSPEEISAMILGKMKDTAEAYLGKKINDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKYSKDISKDNRALGKLR 293          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: BIP5_TOBAC (Luminal-binding protein 5 OS=Nicotiana tabacum GN=BIP5 PE=2 SV=1)

HSP 1 Score: 300.827 bits (769), Expect = 4.577e-81
Identity = 157/233 (67.38%), Postives = 185/233 (79.40%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPS+V FTD ERLIG+AAKNQ A+NP  T+FD KRLIGR+F D  VQ D KL P++++     KP I V  K GE K F+ EEIS+M+L KM+E AEAYLG  IK+AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGLDKK    GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K   DIS + RAL +LR
Sbjct:   68 RITPSWVAFTDGERLIGEAAKNQAAVNPERTIFDVKRLIGRKFDDKEVQRDKKLVPYEIV-NKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKG---GEKNILVFDLGGGTFDVSILTIDNGVFEVLATNGDTHLGGEDFDQRIMEYFIKLIKKKHGKDISKDNRALGKLR 296          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_XENLA5.406e-8268.2478 kDa glucose-regulated protein OS=Xenopus laevis... [more]
BIP_SOLLC5.406e-8267.81Luminal-binding protein OS=Solanum lycopersicum PE... [more]
HSP76_YEAST7.061e-8267.52Heat shock protein SSB2 OS=Saccharomyces cerevisia... [more]
HSP75_YEAST7.061e-8267.52Heat shock protein SSB1 OS=Saccharomyces cerevisia... [more]
GRP78_NEUCR7.061e-8263.7978 kDa glucose-regulated protein homolog OS=Neuros... [more]
BIP2_MAIZE9.222e-8267.81Luminal-binding protein 2 OS=Zea mays GN=BIPE2 PE=... [more]
HSP7C_CAEBR1.204e-8164.10Heat shock 70 kDa protein C OS=Caenorhabditis brig... [more]
GRP78_APLCA1.204e-8168.2478 kDa glucose-regulated protein OS=Aplysia califo... [more]
BIP3_MAIZE1.204e-8167.81Luminal-binding protein 3 OS=Zea mays GN=BIPE3 PE=... [more]
BIP5_TOBAC4.577e-8167.38Luminal-binding protein 5 OS=Nicotiana tabacum GN=... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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