FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_CANGA (78 kDa glucose-regulated protein homolog OS=Candida glabrata GN=KAR2 PE=3 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.739e-80
Identity = 150/232 (64.66%), Postives = 185/232 (79.74%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FTD ERLIGDAAKNQ+A NPTNT+FD KRLIG +F+D SVQ D+K  PFKV+     KP++ V  KGE++ F  EEIS M+L KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAAIAYGLDK   S  E  ++++DLGGGTFDVSLL+IE G+FEV+AT+GDTHLGGEDFD ++V   ++ FK+K   D+S N +AL +L+
Sbjct:   68 RITPSYVAFTDDERLIGDAAKNQIAANPTNTIFDIKRLIGLKFNDRSVQRDIKHLPFKVVDKDG-KPVVQVKVKGEDRVFTPEEISGMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDK---SDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKTFKKKHGIDVSDNEKALAKLK 295          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_BOVIN (78 kDa glucose-regulated protein OS=Bos taurus GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 298.901 bits (764), Expect = 1.739e-80
Identity = 158/234 (67.52%), Postives = 187/234 (79.91%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGLDK+    GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K   D+  + RA+++LR
Sbjct:   61 RITPSYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDVGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLR 290          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_PONAB (78 kDa glucose-regulated protein OS=Pongo abelii GN=HSPA5 PE=2 SV=1)

HSP 1 Score: 296.975 bits (759), Expect = 6.609e-80
Identity = 157/234 (67.09%), Postives = 186/234 (79.49%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKG-EEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TP YV FT + ERLIGDAAKNQ+  NP NTVFDAKRLIGR ++D SVQ D+K  PFKV+     KP I V+  G + K FA EEIS+MVL KM+E AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNVMRIINEPTAAAIAYGLDK+    GEKN+L+FDLGGGTFDVSLLTI+ G+FEV AT GDTHLGGEDFD R++ HF++ +K+K   D+  + RA+++LR
Sbjct:   60 RITPPYVAFTPEGERLIGDAAKNQLTSNPENTVFDAKRLIGRTWNDPSVQQDIKFLPFKVVEKKT-KPYIQVDIGGGQTKTFAPEEISAMVLTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKRE---GEKNILVFDLGGGTFDVSLLTIDNGVFEVVATNGDTHLGGEDFDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLR 289          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: BIP_SPIOL (Luminal-binding protein OS=Spinacia oleracea GN=HSC70 PE=2 SV=1)

HSP 1 Score: 296.59 bits (758), Expect = 8.631e-80
Identity = 154/233 (66.09%), Postives = 184/233 (78.97%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYK-GEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPS+V FT+ ERLIG+AAKNQ A NP  T+FD KRLIGR+F D  VQ DMKL P+K++     KP I V  + GE K F+ EEIS+M+L KM+E AE +LG  IK+AVVTVPAYFND+QRQATKDAGVIAGLNV RIINEPTAAAIAYGLDK+    GEKN+L+FDLGGGTFDVS+LTI+ G+FEV AT GDTHLGGEDFD R++ +F++  K+K   DIS + RAL +LR
Sbjct:   68 RITPSWVAFTNDERLIGEAAKNQAAANPERTIFDVKRLIGRKFEDKEVQKDMKLVPYKIVNRDG-KPYIQVKVQEGETKVFSPEEISAMILTKMKETAETFLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKRG---GEKNILVFDLGGGTFDVSVLTIDNGVFEVLATNGDTHLGGEDFDQRLMEYFIKLIKKKHTKDISKDNRALGKLR 296          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_KLULA (78 kDa glucose-regulated protein homolog OS=Kluyveromyces lactis GN=GRP78 PE=3 SV=1)

HSP 1 Score: 295.049 bits (754), Expect = 2.511e-79
Identity = 144/232 (62.07%), Postives = 184/232 (79.31%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FTD ERLIGDAAKNQ A NP NT+FD KRLIG +++D +VQ D+K  P+ V+    +KP + V  KGE+K+F  EE+S M+L KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLN++RI+NEPTAAAIAYGLDK   +  E  ++++DLGGGTFDVSLL+IE G+FEV+ATAGDTHLGGEDFD ++V HF Q F++K   D++ N +A+ +L+
Sbjct:   83 RITPSYVSFTDDERLIGDAAKNQAASNPKNTIFDIKRLIGLQYNDPTVQRDIKHLPYTVV-NKGNKPYVEVTVKGEKKEFTPEEVSGMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLNILRIVNEPTAAAIAYGLDK---TEDEHQIIVYDLGGGTFDVSLLSIENGVFEVQATAGDTHLGGEDFDYKLVRHFAQLFQKKHDLDVTKNDKAMAKLK 310          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_YEAST (78 kDa glucose-regulated protein homolog OS=Saccharomyces cerevisiae GN=KAR2 PE=1 SV=1)

HSP 1 Score: 294.664 bits (753), Expect = 3.280e-79
Identity = 149/232 (64.22%), Postives = 184/232 (79.31%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FTD ERLIGDAAKNQVA NP NT+FD KRLIG +++D SVQ D+K  PF V+     KP + V+ KGE+K F  EEIS M+L KM++IAE YLG+ + +AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAAIAYGLDK   S  E  ++++DLGGGTFDVSLL+IE G+FEV+AT+GDTHLGGEDFD ++V   ++ FK+K   D+S N +AL +L+
Sbjct:   82 RITPSYVAFTDDERLIGDAAKNQVAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVV-NKDGKPAVEVSVKGEKKVFTPEEISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYGLDK---SDKEHQIIVYDLGGGTFDVSLLSIENGVFEVQATSGDTHLGGEDFDYKIVRQLIKAFKKKHGIDVSDNNKALAKLK 309          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_ASHGO (78 kDa glucose-regulated protein homolog OS=Ashbya gossypii GN=KAR2 PE=3 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 4.284e-79
Identity = 149/235 (63.40%), Postives = 185/235 (78.72%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADK---PMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FTD ERLIGDAAKNQVA NP NT+FD KRLIG +++D +VQ ++K  PF+V+    DK   P + V  KGE K F  EEIS MVL KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGLN++RI+NEPTAAAIAYGLDK   +  E  ++++DLGGGTFDVSLL+IE G+FEV+ATAGDTHLGGEDFD ++V HF++ FK+K   D+S N +A+ +L+
Sbjct:   79 RITPSYVAFTDDERLIGDAAKNQVANNPKNTIFDIKRLIGLKYNDKTVQREIKHLPFEVV----DKNGMPAVAVTVKGERKLFTPEEISGMVLGKMKQIAEEYLGKKVTHAVVTVPAYFNDAQRQATKDAGAIAGLNILRIVNEPTAAAIAYGLDK---TEDEHRIVVYDLGGGTFDVSLLSIENGVFEVQATAGDTHLGGEDFDYKLVRHFLKVFKKKHGVDVSSNAKAMAKLK 306          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_PICAN (78 kDa glucose-regulated protein homolog OS=Pichia angusta GN=BiP PE=3 SV=1)

HSP 1 Score: 291.582 bits (745), Expect = 2.777e-78
Identity = 148/232 (63.79%), Postives = 181/232 (78.02%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT+ ERL+GDAAKNQ+A NPTNT+FD KRLIG RF D  +Q ++K  P+KV      +P++     GE K F AEEIS+M+L KM++IAE YLG  + +AVVTVPAYFND+QRQATKDAG IAGL V+RI+NEPTAAAIAYGLDK   +  EK+++++DLGGGTFDVSLLTI  G FEV ATAGDTHLGGEDFD R+V HF++ FK+K   DIS N +AL +L+
Sbjct:   72 RITPSYVAFTEDERLVGDAAKNQIASNPTNTIFDIKRLIGHRFDDKVIQKEIKHLPYKV-KDQDGRPVVEAKVNGELKTFTAEEISAMILGKMKQIAEDYLGKKVTHAVVTVPAYFNDAQRQATKDAGTIAGLEVLRIVNEPTAAAIAYGLDK---TDEEKHIIVYDLGGGTFDVSLLTIAGGAFEVLATAGDTHLGGEDFDYRVVRHFIKVFKKKHGIDISDNSKALAKLK 299          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_YARLI (78 kDa glucose-regulated protein homolog OS=Yarrowia lipolytica GN=KAR2 PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 3.626e-78
Identity = 143/232 (61.64%), Postives = 184/232 (79.31%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT+ ERL+GDAAKNQ A NP NT+FD KRLIG ++ D SVQ D+K +P+KV      KP++ V  KGE+K +  EEIS+M+L KM++IA+ YLG  + +AVVTVPAYFND+QRQATKDAG+IAGLNV+RI+NEPTAAAIAYGLD    +  EK ++++DLGGGTFDVSLL+IE G+FEV ATAGDTHLGGEDFD R++ HFV+++ +K   DI+ N + + +L+
Sbjct:   69 RITPSYVAFTEDERLVGDAAKNQAANNPFNTIFDIKRLIGLKYKDESVQRDIKHFPYKV-KNKDGKPVVVVETKGEKKTYTPEEISAMILTKMKDIAQDYLGKKVTHAVVTVPAYFNDAQRQATKDAGIIAGLNVLRIVNEPTAAAIAYGLDH---TDDEKQIVVYDLGGGTFDVSLLSIESGVFEVLATAGDTHLGGEDFDYRVIKHFVKQYNKKHDVDITKNAKTIGKLK 296          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: GRP78_SCHPO (78 kDa glucose-regulated protein homolog OS=Schizosaccharomyces pombe GN=bip1 PE=2 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 4.009e-77
Identity = 137/232 (59.05%), Postives = 186/232 (80.17%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            R TPSYV FT+ ERL+G+AAKNQ   NP NT+FD KRLIGR+F + ++  D+K +PF ++    ++P++ VN  G++K+F  EEIS+M+L KM++ AEAYLG  + +AVVTVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAAIAYGLDK  T   EK+++++DLGGGTFDVSLL+I+ G+FEV AT+GDTHLGGEDFDNR++N+  + + RK   D++ + +A+ +L+
Sbjct:   67 RITPSYVAFTEDERLVGEAAKNQAPSNPENTIFDIKRLIGRKFDEKTMAKDIKSFPFHIV-NDKNRPLVEVNVGGKKKKFTPEEISAMILSKMKQTAEAYLGKPVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVIRIVNEPTAAAIAYGLDKTDT---EKHIVVYDLGGGTFDVSLLSIDNGVFEVLATSGDTHLGGEDFDNRVINYLARTYNRKNNVDVTKDLKAMGKLK 294          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GRP78_CANGA1.739e-8064.6678 kDa glucose-regulated protein homolog OS=Candid... [more]
GRP78_BOVIN1.739e-8067.5278 kDa glucose-regulated protein OS=Bos taurus GN=... [more]
GRP78_PONAB6.609e-8067.0978 kDa glucose-regulated protein OS=Pongo abelii G... [more]
BIP_SPIOL8.631e-8066.09Luminal-binding protein OS=Spinacia oleracea GN=HS... [more]
GRP78_KLULA2.511e-7962.0778 kDa glucose-regulated protein homolog OS=Kluyve... [more]
GRP78_YEAST3.280e-7964.2278 kDa glucose-regulated protein homolog OS=Saccha... [more]
GRP78_ASHGO4.284e-7963.4078 kDa glucose-regulated protein homolog OS=Ashbya... [more]
GRP78_PICAN2.777e-7863.7978 kDa glucose-regulated protein homolog OS=Pichia... [more]
GRP78_YARLI3.626e-7861.6478 kDa glucose-regulated protein homolog OS=Yarrow... [more]
GRP78_SCHPO4.009e-7759.0578 kDa glucose-regulated protein homolog OS=Schizo... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
back to top