FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_MARMS (Chaperone protein dnaK OS=Marinomonas sp. (strain MWYL1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 132/239 (55.23%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F  D E L+G +AK Q   NPTNT+F  KRLIGR+F D  VQ D+ + P+K+IA  AD     V  KG++K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYGLDK   S G+  + ++DLGGGTFD+S++ I     E  FEV +T GDT LGGEDFD R++ +   EFK+    D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAFAEDGEVLVGQSAKRQAVTNPTNTLFAVKRLIGRKFKDDVVQKDISMVPYKIIA--ADNGDAWVEVKGDKK--APPQISAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGLDK---SSGDSTIAVYDLGGGTFDISIIEIADVDGEKQFEVLSTNGDTFLGGEDFDMRVIEYLAAEFKKSSGIDLHNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AERS4 (Chaperone protein dnaK OS=Aeromonas salmonicida (strain A449) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.884 bits (603), Expect = 8.116e-62
Identity = 130/239 (54.39%), Postives = 166/239 (69.46%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + + D  E L+G  AK Q   NP NT+F  KRLIGRRF D  VQ D+K+ P+ +    AD     V  KG  K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA AYG++K     GE+ V ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++N+ V EFKR++  D+  +  AL+RL+ A
Sbjct:   34 RTTPSIIAYADDGEILVGQPAKRQAITNPKNTLFAIKRLIGRRFEDEEVQRDLKIMPYAI--AKADNGDAWVEVKG--KKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAFAYGVNKVK---GERKVAVYDLGGGTFDISIIEIDEVEGETTFEVLATNGNTHLGGEDFDNRVINYLVDEFKREQGIDLRNDQLALQRLKDA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_WIGBR (Chaperone protein dnaK OS=Wigglesworthia glossinidia brevipalpis GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.060e-61
Identity = 122/237 (51.48%), Postives = 172/237 (72.57%), Query Frame = 1
Query:    1 RTTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS + +T+  E L+G  AK Q   NP NT F  KRLIGR+F+D  VQ D+ + P+K+++  ++   + +N K ++   A  +IS+ +L KM++ AE Y+G +I  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G + + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFD+R++N+ V EFK+++  D+  +P A++RL+
Sbjct:   38 RTTPSIIAYTEENEILVGQPAKRQSVTNPKNTFFAIKRLIGRKFTDHEVQRDVNIMPYKIVS--SENGDVWLNVKNQK--VAPPQISAEILKKMKKTAEDYIGKSITEAVITVPAYFNDTQRQATKDAGKIAGLDVKRIINEPTAAALAYGLDKK---TGNRIIAVYDLGGGTFDISIIEIDDVDGEKTFEVLSTNGDTHLGGEDFDSRLINYLVNEFKKEQGIDLRNDPLAMQRLK 267          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_THET2 (Chaperone protein dnaK OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.060e-61
Identity = 126/231 (54.55%), Postives = 162/231 (70.13%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRL 693
            R TPS V F D E L+G  AK Q  +NP  T+F+ KR IGRRF +  VQ + K  P+KV+ GP      GV  + + K +  EEIS+M+L K+ E A   LG  I  AV+TVPAYFN++QR+AT +AG IAGL V+RIINEPTAAA+AYGLDKK    G + VL+FDLGGGTFDV++L I EG+FEVKAT+GDTHLGG D D+ +VN   +EFK++   D+  + +AL+RL
Sbjct:   34 RVTPSVVAFRDGETLVGRMAKRQAVLNPEGTIFEIKRFIGRRFEE--VQEEAKRVPYKVVPGPDG----GVRVEVKGKLYTPEEISAMILRKLVEDASKKLGEKITKAVITVPAYFNNAQREATANAGRIAGLEVLRIINEPTAAALAYGLDKK----GNETVLVFDLGGGTFDVTVLEIGEGVFEVKATSGDTHLGGSDMDHAIVNWLAEEFKKEHGVDLKADRQALQRL 254          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_TOLAT (Chaperone protein dnaK OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 127/237 (53.59%), Postives = 169/237 (71.31%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLR 696
            RTTPS + +TD  E L+G  AK Q   NP NT++  KRLIGRR+ D  VQ D+K+ PF ++   AD     V+ KG  ++ AA +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA AYG++K     GE+ + ++DLGGGTFD+S++ I+    E  FEV +T GDTHLGGEDFDNR++N+ V EFKR++  D+  +  AL+RL+
Sbjct:   34 RTTPSIIAYTDDGEILVGQPAKRQSITNPKNTLYAIKRLIGRRYEDEEVQRDIKIMPFDIVR--ADNGDAWVDVKG--RKLAAPQISAEVLKKMKKTAEDFLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAAFAYGVNKVQ---GERKIAVYDLGGGTFDISIIEIDEMDGEKTFEVLSTNGDTHLGGEDFDNRLINYLVDEFKREQGIDLRKDQLALQRLK 263          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOP5 (Chaperone protein dnaK OS=Rhodopseudomonas palustris (strain BisA53) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 121/235 (51.49%), Postives = 164/235 (69.79%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+D  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D KL P+K++        +    + +   ++  ++S+ +L KM+E AEA+LG+ +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK    V    + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EF++++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSIVAFSDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADANTYSPSQVSAFILQKMKETAEAHLGAKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKAKAGV----IAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVSYLADEFQKEQGINLRNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PROMH (Chaperone protein dnaK OS=Proteus mirabilis (strain HI4320) GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 126/239 (52.72%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +  D E L+G  AK Q   N  NT+F  KRLIGRRF DA VQ D+ + P+K+I   AD     V  + E+   A  ++S+ VL KM++ AE YLG  +  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAAA+AYGLD++   VG + + ++DLGGGTFD+S++ I+    E  +EV +T GDTHLGGEDFD+R++N+ V EFK+++  D+  +P A++RL+ A
Sbjct:   34 RTTPSIVAYAQDGEILVGQPAKRQAVTNSQNTLFAIKRLIGRRFEDAEVQRDVSIMPYKIIK--ADNGDAWVEARNEK--MAPPQVSAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDRE---VGNRTIAVYDLGGGTFDISIIEIDEVDGEKTYEVLSTNGDTHLGGEDFDSRLINYLVDEFKKEQGIDLRNDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_GLOVI (Chaperone protein dnaK OS=Gloeobacter violaceus GN=dnaK PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 123/235 (52.34%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FT   +RL+G  A+ Q  +NP NT +  KR IGR++ +  +  + K   ++V+   ++  +   N   E+K FA EEIS++VL K+ + A  YLG  I  AV+TVPAYFNDSQRQATKDAG IAG+ V+RIINEPTAAA+AYGLDKKA     + +L+FDLGGGTFDVS+L + +G+FEVK+T+GDTHLGG+DFD R+V++   EFK+ +  D+  + +AL+RL  A
Sbjct:   34 RTTPSVVAFTKNHDRLVGQLARRQAVLNPENTFYSVKRFIGRKYDE--ITDEAKQVAYRVVRDGSNVKLHSTN---EDKDFAPEEISALVLRKLVDDASKYLGEKITQAVITVPAYFNDSQRQATKDAGRIAGIEVLRIINEPTAAALAYGLDKKA----NETILVFDLGGGTFDVSILEVGDGVFEVKSTSGDTHLGGDDFDRRIVDYLADEFKKLEGVDLRTDRQALQRLTEA 259          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK1_COLP3 (Chaperone protein dnaK 1 OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dnaK1 PE=2 SV=1)

HSP 1 Score: 236.113 bits (601), Expect = 1.384e-61
Identity = 127/238 (53.36%), Postives = 167/238 (70.17%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V + + E L G  AK Q   N TNT+F  KRLIGR+F D  VQ D+KL P+K++   AD     V   G  K  + +E+S+ +L K+++ AEAYLG T+ +AV+TVPAYFNDSQRQATKDAG IAGLNV RIINEPTAAA+AYG+DK + +  ++ V+++DLGGGTFD+S++ I     E  FEV AT GDT LGGEDFD R++N+   EFK++   DI  +  AL+R++ A
Sbjct:   34 RTTPSIVAYANNETLAGQPAKRQSVTNSTNTLFAIKRLIGRKFDDKEVQKDIKLAPYKIVK--ADNGDAWVEVDG--KALSPQEVSAQILRKLKKDAEAYLGETVTDAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGVDKNSNA--DQKVVVYDLGGGTFDLSIIEISNVDGEKQFEVLATNGDTFLGGEDFDLRLINYLADEFKKESGIDIHQDTLALQRIKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_TERTT (Chaperone protein dnaK OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=dnaK PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.361e-61
Identity = 128/239 (53.56%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 RTTPSYVGFTD-TERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V FTD  E L+G +AK Q   NP NT+F  KRLIGR+F+D  VQ D+K+ P+ ++   AD     V  KG++K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL V RIINEPTAAA+AYG+DK   + G++ + ++DLGGGTFD+S++ I     E  FEV +T GDT LGGEDFD R++ +  +EFK+    D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAFTDDNEILVGQSAKRQAVTNPRNTLFAVKRLIGRKFTDDVVQKDIKMVPYSIVG--ADNGDAWVEVKGDKK--APPQISAEVLKKMKKTAEDYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVKRIINEPTAAALAYGMDK---AKGDRTIAVYDLGGGTFDISVIEIADVDGEHQFEVLSTNGDTFLGGEDFDLRLIEYLAEEFKKSNGIDLHNDPLALQRLKEA 265          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_MARMS8.116e-6255.23Chaperone protein dnaK OS=Marinomonas sp. (strain ... [more]
DNAK_AERS48.116e-6254.39Chaperone protein dnaK OS=Aeromonas salmonicida (s... [more]
DNAK_WIGBR1.060e-6151.48Chaperone protein dnaK OS=Wigglesworthia glossinid... [more]
DNAK_THET21.060e-6154.55Chaperone protein dnaK OS=Thermus thermophilus (st... [more]
DNAK_TOLAT1.384e-6153.59Chaperone protein dnaK OS=Tolumonas auensis (strai... [more]
DNAK_RHOP51.384e-6151.49Chaperone protein dnaK OS=Rhodopseudomonas palustr... [more]
DNAK_PROMH1.384e-6152.72Chaperone protein dnaK OS=Proteus mirabilis (strai... [more]
DNAK_GLOVI1.384e-6152.34Chaperone protein dnaK OS=Gloeobacter violaceus GN... [more]
DNAK1_COLP31.384e-6153.36Chaperone protein dnaK 1 OS=Colwellia psychrerythr... [more]
DNAK_TERTT2.361e-6153.56Chaperone protein dnaK OS=Teredinibacter turnerae ... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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