FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_XYLF2 (Chaperone protein dnaK OS=Xylella fastidiosa (strain M23) GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.261e-61
Identity = 128/239 (53.56%), Postives = 164/239 (68.62%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +T D E L+G AAK Q   NP NT +  KRLIGR+F DA VQ D+ L P+K+         +      + K+ A +EIS+ VL KM++ AE +LG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYGLDKK    G++ + ++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EF + +  D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYTKDGEVLVGAAAKRQAVTNPKNTFYAVKRLIGRKFGDAEVQKDLDLVPYKITQHDNGDAWVAT---ADGKKLAPQEISAKVLEKMKKTAEDFLGEKVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGLDKKG---GDRKIAVYDLGGGTFDVSIIEIAEVDGEKQFEVLATNGDTFLGGEDFDKRVIDYLVDEFNKDQGIDLRKDPLALQRLKDA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RUTMC (Chaperone protein dnaK OS=Ruthia magnifica subsp. Calyptogena magnifica GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.261e-61
Identity = 129/240 (53.75%), Postives = 165/240 (68.75%), Query Frame = 1
Query:    1 RTTPSYVGFT--DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +     E L+G  AK Q   NP NT++  KRLIGRRF + +VQ D+ L P+K++    D     V  KG  K+ AA EIS+ V+ KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGLNV RIINEPTAAA+AYG+DK     G K + ++DLGGGTFDVS++ +E    E  FEV +T GDT LGGEDFD R++ + V EFKR +  D++ +P AL+RL+ A
Sbjct:   34 RTTPSIIAYPKDSEEVLVGQPAKRQAVTNPENTLYAIKRLIGRRFDEDAVQKDINLVPYKIVK--VDNGDAWVEVKG--KKMAAPEISAKVIGKMKKTAEDYLGEEVTEAVITVPAYFNDSQRQATKDAGKIAGLNVKRIINEPTAAALAYGVDKVK---GNKTIAVYDLGGGTFDVSIIEMEDIDGEKHFEVLSTNGDTFLGGEDFDQRIIGYLVDEFKRDQGVDLTNDPMALQRLKEA 266          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_BRAJA (Chaperone protein dnaK OS=Bradyrhizobium japonicum GN=dnaK PE=2 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 5.261e-61
Identity = 120/235 (51.06%), Postives = 162/235 (68.94%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V  TD  ERL+G  AK Q   NP  T F  KRLIGRR+ D  V+ D KL P+K++        +    + + + ++  ++S+ +L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK  T      + ++DLGGGTFD+S+L I +G+FEVK+T GDT LGGEDFD R+V +   EF++++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSIVAVTDDGERLVGQPAKRQAVTNPERTFFAVKRLIGRRYDDPMVEKDKKLVPYKIVKASNGDAWV----EADGQTYSPSQVSAFILQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKTKTG----TIAVYDLGGGTFDISILEIGDGVFEVKSTNGDTFLGGEDFDMRLVGYLADEFQKEQGINLRNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPF (Chaperone protein dnaK OS=Pseudomonas fluorescens (strain Pf0-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61
Identity = 127/239 (53.14%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   KQ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIIAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEEVVQKDIKLVPYKIVKANNGDAWV----EASGKQMAPPQISAEVLKKMKKTAEDYLGEAVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CHLMU (Chaperone protein dnaK OS=Chlamydia muridarum GN=dnaK PE=2 SV=2)

HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61
Identity = 122/234 (52.14%), Postives = 163/234 (69.66%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F  +E L+G  AK Q   NP  T+   KR IGR+FS+  V+ ++K  P+KV        +  V    E K +  EEI + +L+KM+E AEAYLG T+  AV+TVPAYFNDSQR +TKDAG IAGL+V RII EPTAAA+AYG+DK+    G+K + +FDLGGGTFD+S+L I +G+FEV +T GDTHLGG+DFD  ++N  + EFK+++  D+S +  AL+RL+ A
Sbjct:   40 RTTPSIVAFKGSETLVGIPAKRQAVTNPEKTLASTKRFIGRKFSE--VESEIKTVPYKVAPNSKGDAVFEV----ENKLYTPEEIGAQILMKMKETAEAYLGETVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDKE----GDKKIAVFDLGGGTFDISILEIGDGVFEVLSTNGDTHLGGDDFDEVIINWMLGEFKKQEGIDLSKDNMALQRLKDA 263          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_AMOA5 (Chaperone protein dnaK OS=Amoebophilus asiaticus (strain 5a2) GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 6.871e-61
Identity = 118/237 (49.79%), Postives = 169/237 (71.31%), Query Frame = 1
Query:    1 RTTPSYVGFTDT---ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F +    ER +GDAAK Q  +NP NT+   KR +G+R+SD  +  + KL P+++  G  D   + +     ++ +  +EIS+M+L KM+  AE YLG+T+K AV+TVPAYFND++RQATK+AG IAGL V RIINEPTAAA+AYGLDKK     +  + +FDLGGGTFD+S+L + +G+FEVK+T GD HLGG++FD ++++   +EFK+++  D+  +P AL+RL+ A
Sbjct:   34 RTTPSVVAFLNEGQGERKVGDAAKRQAIINPQNTISSIKRFMGKRYSD--IAEESKLVPYQLEKGNNDTVRVRIG----DRTYTPQEISAMILQKMKTTAEDYLGTTVKEAVITVPAYFNDAERQATKEAGQIAGLEVKRIINEPTAAALAYGLDKKNQ---DMKIAVFDLGGGTFDISILELGDGVFEVKSTNGDVHLGGDNFDQKLIDWLAEEFKKEESVDLRKDPTALQRLKEA 261          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_RHOMR (Chaperone protein dnaK OS=Rhodothermus marinus GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 116/235 (49.36%), Postives = 167/235 (71.06%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            R TPS V FT D E L+G  AK Q   NP NT+F  KR +GR + +  V  ++ + P+KV+ G  +   + V   GE++ +  +EIS+M+L K+++ AE YLG  +  AV+TVPAYFND+QR+ATK+AG IAGL V RI+NEPTAAA+AYGLDKK     E  + ++DLGGGT+D+S+L + +G+FEVKAT GDTHLGG++FD R++++   EF++++  D+  +P AL+RL+ A
Sbjct:   34 RVTPSVVAFTADGEPLVGAPAKRQAITNPKNTIFSIKRFMGRFYDE--VTEEISMVPYKVVRGENNTVRVEVEVGGEKRLYTPQEISAMILQKLKQTAEEYLGVPVTEAVITVPAYFNDAQRKATKEAGEIAGLKVRRILNEPTAAALAYGLDKKDK---ELKIAVYDLGGGTYDISILELGDGVFEVKATNGDTHLGGDNFDQRLIDYIADEFQKQEGIDLRKDPMALQRLKEA 263          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPG (Chaperone protein dnaK OS=Pseudomonas putida (strain GB-1) GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 128/239 (53.56%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++ G      +    +   K  A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEEVVQKDIKLVPYKIVKGGNGDAWV----QAGGKDMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_NITHX (Chaperone protein dnaK OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 122/235 (51.91%), Postives = 163/235 (69.36%), Query Frame = 1
Query:    1 RTTPSYVGFTDT-ERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F+D  ERL+G  AK Q   NP  T+F  KRLIGRR+ D +V+ D  L P+K+         + V    + K ++  +IS+  L KM+E AEA+LG  +  AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDK      +  + ++DLGGGTFDVS+L I +G+FEVK+T GDT LGGEDFD R+V++   EF++++  ++  +  AL+RL+ A
Sbjct:   34 RTTPSIVAFSDDGERLVGQPAKRQAVTNPERTIFAVKRLIGRRYDDPTVEKDKHLVPYKIAKAGNGDAWVEV----DGKTYSPSQISAFTLQKMKETAEAHLGQKVDQAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK----AKQGTIAVYDLGGGTFDVSILEIGDGVFEVKSTNGDTFLGGEDFDMRLVSYLADEFQKEQGINLRNDKLALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_HAEIG (Chaperone protein dnaK OS=Haemophilus influenzae (strain PittGG) GN=dnaK PE=2 SV=1)

HSP 1 Score: 233.417 bits (594), Expect = 8.974e-61
Identity = 123/238 (51.68%), Postives = 167/238 (70.17%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG T+  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL    +S   + + ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +  AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGETVTEAVITVPAYFNDAQRQATIDAGKIAGLDVKRIINEPTAAALAFGL---GSSKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQNIDLRNDAMALQRVKEA 264          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_XYLF25.261e-6153.56Chaperone protein dnaK OS=Xylella fastidiosa (stra... [more]
DNAK_RUTMC5.261e-6153.75Chaperone protein dnaK OS=Ruthia magnifica subsp. ... [more]
DNAK_BRAJA5.261e-6151.06Chaperone protein dnaK OS=Bradyrhizobium japonicum... [more]
DNAK_PSEPF6.871e-6153.14Chaperone protein dnaK OS=Pseudomonas fluorescens ... [more]
DNAK_CHLMU6.871e-6152.14Chaperone protein dnaK OS=Chlamydia muridarum GN=d... [more]
DNAK_AMOA56.871e-6149.79Chaperone protein dnaK OS=Amoebophilus asiaticus (... [more]
DNAK_RHOMR8.974e-6149.36Chaperone protein dnaK OS=Rhodothermus marinus GN=... [more]
DNAK_PSEPG8.974e-6153.56Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_NITHX8.974e-6151.91Chaperone protein dnaK OS=Nitrobacter hamburgensis... [more]
DNAK_HAEIG8.974e-6151.68Chaperone protein dnaK OS=Haemophilus influenzae (... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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