FC875481

Overview
NameFC875481
Unique NameFC875481
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10212 contig Ccv1_Contig10212:223..925. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ACTPJ (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.531e-60
Identity = 125/239 (52.30%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVL-IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL     S  E  V+ ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +P AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDVKRIINEPTAAALAFGLG----STKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQGVDLRNDPMALQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ACTP7 (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.531e-60
Identity = 125/239 (52.30%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVL-IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL     S  E  V+ ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +P AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDVKRIINEPTAAALAFGLG----STKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQGVDLRNDPMALQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_ACTP2 (Chaperone protein dnaK OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.646 bits (592), Expect = 1.531e-60
Identity = 125/239 (52.30%), Postives = 167/239 (69.87%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVL-IFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +TD E L+G  AK Q   NP NT+F  KRLIGRRF    VQ D+K+ PF++    AD     VN KG++   A  +IS+ VL KM++ AE +LG  +  AV+TVPAYFND+QRQAT DAG IAGL+V RIINEPTAAA+A+GL     S  E  V+ ++DLGGGTFD+S++ I+    E  FEV AT G+THLGGEDFDNR++++ + EFK+++  D+  +P AL+R++ A
Sbjct:   34 RTTPSIIAYTDNETLVGQPAKRQAITNPKNTLFAIKRLIGRRFESEEVQRDIKIMPFEITR--ADNGDAWVNVKGDK--LAPPQISAEVLKKMKKTAEDFLGEAVTEAVITVPAYFNDAQRQATIDAGRIAGLDVKRIINEPTAAALAFGLG----STKENQVIAVYDLGGGTFDISIIEIDNFDGEQTFEVLATGGNTHLGGEDFDNRVIDYIIDEFKKEQGVDLRNDPMALQRVKEA 264          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEU5 (Chaperone protein dnaK OS=Pseudomonas stutzeri (strain A1501) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 127/239 (53.14%), Postives = 169/239 (70.71%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS + +T D E L+G +AK Q   NP NT++  KRLIGRRF +  VQ D+K+ P+ ++   AD     V  KG++   A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   ++ G+P A++RL+ A
Sbjct:   34 RTTPSIIAYTNDGETLVGQSAKRQAVTNPQNTLYAVKRLIGRRFEEDVVQKDIKMVPYTIVK--ADNGDAWVEVKGQK--MAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDIRLIDYLVDEFKKETGMNLKGDPLAMQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPW (Chaperone protein dnaK OS=Pseudomonas putida (strain W619) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 127/239 (53.14%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEDVVQKDIKLVPYKIVKANNGDAWV----EASGKEMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DESVV (Chaperone protein dnaK OS=Desulfovibrio vulgaris subsp. vulgaris (strain DP4) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 122/235 (51.91%), Postives = 165/235 (70.21%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKK-QXDISGNPRALRRLRTA 702
            RTTPS V FTD ERL+GD AK Q   NP  TVF  KRL+GRR     V    +  P++++AG      + V    + + ++A EIS+M+L K++  AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA++AYG D+KA     + + +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++++ V EF+R+    D++ +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDKERLVGDIAKRQAVTNPERTVFAVKRLMGRRGDAPEVGRWKEHSPYRIVAGANGDAAVEV----QGRPYSAPEISAMILGKLKADAEAYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAASLAYGFDRKA----NEKIAVFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRIISYLVDEFRRENGGIDLARDRMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DESVH (Chaperone protein dnaK OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 122/235 (51.91%), Postives = 165/235 (70.21%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKK-QXDISGNPRALRRLRTA 702
            RTTPS V FTD ERL+GD AK Q   NP  TVF  KRL+GRR     V    +  P++++AG      + V    + + ++A EIS+M+L K++  AEAYLG T+  AV+TVPAYFND+QRQATKDAG IAGL+V RIINEPTAA++AYG D+KA     + + +FDLGGGTFD+S+L + + + EV+AT GDT LGGEDFD R++++ V EF+R+    D++ +  AL+RL+ A
Sbjct:   34 RTTPSVVAFTDKERLVGDIAKRQAVTNPERTVFAVKRLMGRRGDAPEVGRWKEHSPYRIVAGANGDAAVEV----QGRPYSAPEISAMILGKLKADAEAYLGETVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAASLAYGFDRKA----NEKIAVFDLGGGTFDISILEVGDNVVEVRATNGDTFLGGEDFDQRIISYLVDEFRRENGGIDLARDRMALQRLKEA 260          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_DEIGD (Chaperone protein dnaK OS=Deinococcus geothermalis (strain DSM 11300) GN=dnaK PE=2 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 122/231 (52.81%), Postives = 163/231 (70.56%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRL 693
            RTTPS V +   ERL+G  A+ Q A+NP  T+F+ KR IGRR+ +  V+ +    PF V  GP     I VN     K  A E++S+ VL K+   A A LG  I +AV+TVPAYF++SQR+ATK AG IAGLNV+R+INEPTAAA+AYGL++K    G + VL+FDLGGGTFDV++L + EG+FEV++TAGDTHLGG DFD R+VN   +EF+++   D+  +P+AL+RL
Sbjct:   34 RTTPSVVAYKGDERLVGQIARRQAALNPKATLFEVKRFIGRRWDE--VKEEAARMPFTVKEGPGGSVRIEVN----GKDLAPEQVSAEVLRKLVADASAKLGEKITDAVITVPAYFDNSQREATKQAGEIAGLNVLRVINEPTAAALAYGLERK----GNETVLVFDLGGGTFDVTILELGEGVFEVRSTAGDTHLGGADFDQRIVNWLAEEFRKEHNFDLRKDPQALQRL 254          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_CHLAB (Chaperone protein dnaK OS=Chlamydophila abortus GN=dnaK PE=2 SV=2)

HSP 1 Score: 232.261 bits (591), Expect = 1.999e-60
Identity = 120/234 (51.28%), Postives = 163/234 (69.66%), Query Frame = 1
Query:    1 RTTPSYVGFTDTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V F   E L+G  AK Q   NP  T+   KR IGR++S+  V+ ++K  P++V +G     +  +    + KQF  EEI + VLIKM+E AEAYLG  +  AV+TVPAYFNDSQR +TKDAG IAGL+V RII EPTAAA+AYG+DK     G+K + +FDLGGGTFD+S+L I +G+FEV +T GDTHLGG+DFD  ++   ++EF++++  D+S +  AL+RL+ A
Sbjct:   40 RTTPSIVAFKGNETLVGIPAKRQAVTNPAKTLASTKRFIGRKYSE--VESEIKTVPYQVASGSNGDVVFPI----DGKQFTPEEIGAQVLIKMKETAEAYLGEPVTEAVITVPAYFNDSQRASTKDAGRIAGLDVKRIIPEPTAAALAYGIDK----AGDKKIAVFDLGGGTFDISILEIGDGVFEVLSTNGDTHLGGDDFDEVIIKWMIEEFQKQEGIDLSKDNMALQRLKDA 263          
BLAST of FC875481 vs. ExPASy Swiss-Prot
Match: DNAK_PSEPK (Chaperone protein dnaK OS=Pseudomonas putida (strain KT2440) GN=dnaK PE=2 SV=1)

HSP 1 Score: 231.876 bits (590), Expect = 2.611e-60
Identity = 127/239 (53.14%), Postives = 165/239 (69.04%), Query Frame = 1
Query:    1 RTTPSYVGFT-DTERLIGDAAKNQVAMNPTNTVFDAKRLIGRRFSDASVQGDMKLWPFKVIAGPADKPMIGVNYKGEEKQFAAEEISSMVLIKMREIAEAYLGSTIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEPTAAAIAYGLDKKATSVGEKNVLIFDLGGGTFDVSLLTIE----EGIFEVKATAGDTHLGGEDFDNRMVNHFVQEFKRKKQXDISGNPRALRRLRTA 702
            RTTPS V +  D E L+G +AK Q   NP NT+F  KRLIGRRF +  VQ D+KL P+K++        +    +   K+ A  +IS+ VL KM++ AE YLG  +  AV+TVPAYFNDSQRQATKDAG IAGL+V RIINEPTAAA+AYG+DK   + G+  V+++DLGGGTFDVS++ I     E  FEV AT GDT LGGEDFD R++++ V EFK++   D+  +P AL+RL+ A
Sbjct:   34 RTTPSIVAYANDGEILVGQSAKRQAVTNPHNTLFAVKRLIGRRFEEDVVQKDIKLVPYKIVKANNGDAWV----EAAGKEMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDSQRQATKDAGRIAGLDVKRIINEPTAAALAYGMDK---AKGDHTVIVYDLGGGTFDVSVIEIAEVDGEHQFEVLATNGDTFLGGEDFDMRLIDYLVDEFKKESGMDLKNDPLALQRLKEA 265          
The following BLAST results are available for this feature:
BLAST of FC875481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DNAK_ACTPJ1.531e-6052.30Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_ACTP71.531e-6052.30Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_ACTP21.531e-6052.30Chaperone protein dnaK OS=Actinobacillus pleuropne... [more]
DNAK_PSEU51.999e-6053.14Chaperone protein dnaK OS=Pseudomonas stutzeri (st... [more]
DNAK_PSEPW1.999e-6053.14Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]
DNAK_DESVV1.999e-6051.91Chaperone protein dnaK OS=Desulfovibrio vulgaris s... [more]
DNAK_DESVH1.999e-6051.91Chaperone protein dnaK OS=Desulfovibrio vulgaris (... [more]
DNAK_DEIGD1.999e-6052.81Chaperone protein dnaK OS=Deinococcus geothermalis... [more]
DNAK_CHLAB1.999e-6051.28Chaperone protein dnaK OS=Chlamydophila abortus GN... [more]
DNAK_PSEPK2.611e-6053.14Chaperone protein dnaK OS=Pseudomonas putida (stra... [more]

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Properties
Property NameValue
Genbank descriptionC31404D09EF CTVClemen1 Citrus clementina cDNA clone C31404D09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875481 ID=FC875481; Name=FC875481; organism=Citrus clementina; type=EST; length=703bp
AGGACGACGCCGTCTTATGTGGGGTTCACCGACACGGAGCGTTTGATCGG
GGACGCTGCTAAGAACCAGGTCGCCATGAACCCCACGAACACCGTCTTTG
ATGCAAAGAGGTTGATTGGTAGGAGATTCAGCGATGCATCAGTCCAAGGA
GATATGAAGCTATGGCCATTTAAGGTGATTGCTGGACCAGCTGACAAGCC
CATGATTGGTGTTAACTACAAGGGCGAAGAGAAGCAGTTTGCTGCTGAGG
AAATCTCGTCTATGGTGCTCATCAAGATGCGTGAGATTGCCGAGGCTTAC
CTTGGCTCAACTATTAAGAATGCAGTCGTTACTGTCCCTGCTTACTTCAA
TGACTCACAGAGGCAGGCCACCAAGGATGCTGGTGTCATTGCTGGGCTTA
ATGTGATGCGTATCATCAATGAGCCCACTGCTGCTGCCATTGCTTATGGC
CTTGACAAGAAGGCTACTAGTGTGGGTGAGAAGAATGTGTTGATCTTTGA
TTTGGGTGGTGGTACTTTTGATGTGTCGTTGCTCACTATTGAGGAGGGAA
TCTTTGAAGTGAAGGCTACTGCTGGAGACACTCATCTTGGTGGTGAGGAT
TTTGATAACAGAATGGTGAATCATTTTGTTCAGGAGTTTAAGAGGAAGAA
ACAGAANGATATTAGTGGCAACCCTAGAGCTCTTAGGAGATTGAGGACTG
CTT
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