FC875593
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHOP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisA53) GN=sucC PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.277e-35 Identity = 88/238 (36.97%), Postives = 132/238 (55.46%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730 +NIHEYQ ++ +G+++ KG+A+ E + A + + VVKSQI AGGRG G FK +G +GGV + K +EV+ A +MLG LVT QTGP GK V+++Y+ E ++ E Y ++++DR T+ + ++GG +IED+A P I+ +D GI V L A + +LY F D +LEINPL T +L DAK++FD N+ +RQ Sbjct: 1 MNIHEYQAKAVLQPFGVSLSKGVAILKASEAEAAAKQL--PGPVWVVKSQIHAGGRGKGKFKEASAGSQGGVRLAKSIDEVKQFAQEMLGATLVTLQTGPAGKQVNRLYIEEGSAIDKEFYLSLLVDRATSRVSFVVSTEGGMNIEDVAHDTPEKIISFSVDPATGIMPHHGRIVAKTLGLTGELAKQAGKLTTQLYTAFVAKDMEMLEINPLVLTKDGELRCLDAKMSFDSNSLYRQ 236
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHILO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium loti GN=sucC PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.277e-35 Identity = 92/237 (38.82%), Postives = 128/237 (54.01%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQG L+ +G V +G+ V E + A + + VVKSQI AGGRG G FK KGGV + K +V A +MLG LVTKQTGP GK V+++Y+ + + E+Y +I++DR + ++GG IE +A P ++ V ID G+T +D K+ L D LYK F E D +LLE+NPL +L DAK++FD+NA FR Sbjct: 1 MNIHEYQGKALLKSFGAPVAEGVPVFKASEAEAAARAL--PGPLYVVKSQIHAGGRGKGKFKELSPDAKGGVRLAKSVADVVANANEMLGHTLVTKQTGPAGKQVNRLYIEDGADIERELYLSILVDRSVGRIAFVVSTEGGMDIEAVAHDTPEKVITVAIDPERGVTADDVKKLNAALKLDGDAAKDGGTLFPILYKAFIEKDMSLLEVNPLIVMKNGRLRVLDAKVSFDNNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BRASO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=sucC PE=3 SV=1) HSP 1 Score: 148.673 bits (374), Expect = 3.277e-35 Identity = 89/237 (37.55%), Postives = 130/237 (54.85%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFK---SGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ ++G+ + KG+ V ++ A + + VVKSQI AGGRG G FK +G KGGV + K +EV A +MLG LVT QTGP GK V+++Y+ + + E Y ++++DR+T+ + ++GG +IED+A + P IV +D G+ V L A + +LY F D +LEINPL T QL DAK++FD NA F+ Sbjct: 1 MNIHEYQAKALLHEFGVPISKGVPVLRPEDADAAAKTL--GGPVWVVKSQIHAGGRGKGKFKEASAGDKGGVRLAKSIDEVNTFARQMLGATLVTVQTGPDGKQVNRLYIEDGSDIDKEFYLSLLVDRETSKVAFVVSTEGGVNIEDVAHETPEKIVTFSVDPATGVMGHHGRAVAKALKLSGDLAKQAEKLTTQLYNAFVAKDMAMLEINPLVVTKQGQLRVLDAKVSFDSNALFK 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHIEC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=sucC PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.281e-35 Identity = 93/237 (39.24%), Postives = 128/237 (54.01%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ YG V +G+A+ +E + A + + VVKSQI AGGRG G FK KGGV + K E+V A +MLG LVT QTG GK V+++Y+ + + E+Y ++++DR + ++GG IE +A P I + ID G+T D AK+ L + A DA LY+ F E D +LLEINPL L DAK++FD NA FR Sbjct: 1 MNIHEYQAKALLKGYGAPVAEGVAILKAEEAEAAAKSL--PGPLYVVKSQIHAGGRGKGKFKELSPEAKGGVRLAKSIEDVVANAKEMLGNTLVTAQTGEAGKQVNRLYIEDGADIDRELYCSLLVDRSVGKVAFVVSTEGGMDIEAVAHDTPEKIQTIAIDPETGVTAADVAKISAALKLEGAAAEDAKSLFPLLYRAFNEKDMSLLEINPLIVMKNGHLRVLDAKMSFDGNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NEOSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Neorickettsia sennetsu (strain Miyayama) GN=sucC PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.281e-35 Identity = 95/235 (40.43%), Postives = 126/235 (53.62%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFP-DHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ E++ G+ P G V E + + + K VK+QI AGGRG GGV I + EE D KMLG LVT QT P G+ V KVY+ S++ E Y ++++DR+ A II +GG IE++A P I KV +D+ GI+D A K+ L +A VKKLY LF D + +EINPL S + +A DAKLNFDDNA +R Sbjct: 1 MNIHEYQAKEILRVCGVPTPAGFLVQEDTETSEIAKSLARLGGKVFAVKAQIHAGGRGKA-------GGVVICRSVEEAIDNTKKMLGMNLVTHQTSPAGQKVRKVYIEAGQSILKEYYLSMVVDRENAKVAIIASEEGGMDIEEIARSTPEKIKKVFVDLSIGISDFHARKIGFELGLSLAQIKQFTPLVKKLYALFVTRDASQVEINPLIANSKGEFIALDAKLNFDDNALYR 228
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AGRVS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=sucC PE=3 SV=1) HSP 1 Score: 148.288 bits (373), Expect = 4.281e-35 Identity = 89/239 (37.24%), Postives = 130/239 (54.39%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733 +NIHEYQ L+ +G V +G+A+ S DE + A + + VVKSQI AGGRG G FK KGGV + +EV+ +MLG LVT QTGP GK V+++Y+ + + E+Y ++++DR + ++GG IE +A P I+ V ID G+T + + L + + DA + LYK F E D LLE+NPL ++ DAK++FD NA FR + Sbjct: 1 MNIHEYQAKALLKSFGAPVAEGVAIFSADEAEAAAKQL--PGPLYVVKSQIHAGGRGKGKFKELGPDAKGGVRLAFSIDEVKSHVAEMLGNTLVTNQTGPAGKQVNRLYIEDGADIERELYLSLLVDRAVGQVAFVVSTEGGMDIETVAHDTPEKIISVAIDPEAGVTAANLEALTAALLLEGEAKADAEKLFPILYKAFVEKDMALLEVNPLIVMKNGRMRVLDAKMSFDGNALFRHE 237
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RHIE6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium etli (strain CIAT 652) GN=sucC PE=3 SV=1) HSP 1 Score: 147.902 bits (372), Expect = 5.591e-35 Identity = 93/237 (39.24%), Postives = 126/237 (53.16%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKS---GLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 +NIHEYQ L+ YG V +G+A+ +E + A + + VVKSQI AGGRG G FK KGGV + K E+V +MLG LVT QTG GK V+++Y+ + + E+Y ++++DR + ++GG IE +A P I + ID G+T D AK+ L A DA LYK F E D +LLEINPL L DAK++FD NA FR Sbjct: 1 MNIHEYQAKALLKGYGAPVAEGVAILKAEEAEAAAKSL--PGPLYVVKSQIHAGGRGKGKFKELSPEAKGGVRLAKSVEDVVANVKEMLGNTLVTAQTGEAGKQVNRLYIEDGADIERELYCSLLVDRSVGKVAFVVSTEGGMDIEAVAHDTPEKIQTIAIDPETGVTAADVAKISSALKLDGAAGEDAKSLFPLLYKAFNEKDMSLLEINPLIVMKNGHLRVLDAKMSFDGNALFR 235
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SULSY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Sulfurihydrogenibium sp. (strain YO3AOP1) GN=sucC PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35 Identity = 89/234 (38.03%), Postives = 130/234 (55.56%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + +HE+Q E+ KYG+ VP+G V E +A +++ +VVK+QI AGGRG GGV + K EEV+ +A ++LG+ L T QTGP+G VS++Y+ E ++ E Y AI LDR + PII+ + GG IE++A P I+ I+ F G+ A ++ L N A LYK++ E D +++EINPL T +V DAK+ FDDN FR Sbjct: 1 MKVHEHQAKEIFRKYGLPVPRGYPAFDVKEAVEAAEEL--GTWPVVVKAQIHAGGRGKA-------GGVKLAKSIEEVQQIASELLGKKLATFQTGPEGLPVSRLYIEEATAIDKEFYVAITLDRSKSKPIIMVSAAGGMEIEEVAATNPEAIITQTIEPFIGLRSYHARELALKLGLPKNLLNKAASIFTTLYKIYIELDASMVEINPLVLTKDGNIVILDAKIEFDDNGLFR 225
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain L550) GN=sucC PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35 Identity = 84/236 (35.59%), Postives = 129/236 (54.66%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + IHEYQ E++ ++ NVP G+ + + KA +V +VVK+QI AGGRG G GGV + K KE+ K+LG L+T QTGP+GK V KVYL + + + E Y +I+LDR I++ ++GG IE++AE +P I+K+ +D G+ A ++ L V +Y + + D +LLEINPL T +++A D K++ D+NA +R Sbjct: 1 MKIHEYQAKEILRRHKANVPFGIVIDKKENASKAHDEVTSKTGGSVVVVKAQIHAGGRGKG-------GGVKVTKTKEDATAAVDKILGMQLITPQTGPEGKKVLKVYLEQGIDIAKEYYLSILLDRSIRKTILMASTEGGMEIEEVAETHPEKILKIAVDPGIGLQVNQARQLAFELGLPAESHKSFQSLVMAIYDAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEPBJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Leptospira borgpetersenii serovar Hardjo-bovis (strain JB197) GN=sucC PE=3 SV=1) HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35 Identity = 84/236 (35.59%), Postives = 129/236 (54.66%), Query Frame = 2 Query: 29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDH--KELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727 + IHEYQ E++ ++ NVP G+ + + KA +V +VVK+QI AGGRG G GGV + K KE+ K+LG L+T QTGP+GK V KVYL + + + E Y +I+LDR I++ ++GG IE++AE +P I+K+ +D G+ A ++ L V +Y + + D +LLEINPL T +++A D K++ D+NA +R Sbjct: 1 MKIHEYQAKEILRRHKANVPFGIVIDKKENASKAHDEVTSKTGGSVVVVKAQIHAGGRGKG-------GGVKVTKTKEDATAAVDKILGMQLITPQTGPEGKKVLKVYLEQGIDIAKEYYLSILLDRSIRKTILMASTEGGMEIEEVAETHPEKILKIAVDPGIGLQVNQARQLAFELGLPAESHKSFQSLVMAIYDAYIKEDASLLEINPLILTKQNEIIAGDCKIDLDENALYR 229 The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bpback to top |