FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_GRAFK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Gramella forsetii (strain KT0803) GN=sucC PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.166e-32
Identity = 85/245 (34.69%), Postives = 136/245 (55.51%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKE--LVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-----SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            +NIHEYQG E++  +G+ + +G    +  E  +A +++         V+K+Q+ AGGRG G       GGV + K  +EVE++AG+++G  LVT QT  +GK V +V + E +     +   E Y +++L+R T   +I+  ++GG  IE +AE+ P +I    ID   G+    A ++   L        +  + V  LY+ F +SD +L EINP+ +TS   ++A DAK+  DDNA FR K Y
Sbjct:    1 MNIHEYQGKEILNSFGVRIQRGTVARNAKEAVEAAKELTEKTGTGWHVIKAQVHAGGRGKG-------GGVKLAKNLKEVEEIAGEIIGMNLVTPQTSAEGKKVHQVLVTEDVYYPGDNEPEEYYMSVLLNRATGRNMIMYSTEGGMDIETVAEETPELIFTEEIDPATGLLGFQARRIAFNLGLSGKGFKEMTKFVMSLYEAFEKSDSSLFEINPVLKTSDDLIMAVDAKVTLDDNALFRHKDY 238          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ANADE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-C) GN=sucC PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 3.392e-32
Identity = 83/234 (35.47%), Postives = 126/234 (53.85%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E++ K+G+ VP+G    +  E + A + +        VK+QI AGGRG G       GGV + +  +E    A  MLG +L T QTGP+G+ V KVY+ E   +  E+Y  + LDR+     ++   +GG  IE++A K+P+ I++  I    G+    A ++  GL          +     LY  +  +D +L EINPL  T G +++A DAK+NFDDNA +R
Sbjct:    1 MKIHEYQAKEILRKFGVAVPRGYLAVTPLEAEGAARQLGGGIS--AVKAQIHAGGRGKG-------GGVKLARSPDEARQHAEAMLGMMLKTPQTGPEGQEVRKVYVEEGCRIARELYLGMTLDREIGRLAVMASVEGGVDIEEVAAKHPDKILREWISPLTGLMPFQARRLAFGLGLSGDSVTAFVRFATGLYNAYVATDASLAEINPLVITVGGEVLALDAKMNFDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EHRCJ (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia canis (strain Jake) GN=sucC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 84/234 (35.90%), Postives = 124/234 (52.99%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   +++++G++VPKG  V S+ EV  A   +    K +VVK+QI AGGRG         GGV + +  +E +     MLG  LVT QT   G+ V KVYL E   +  E Y + +++RK +   II  ++GG  IE++A   P  ++   ID   G        +       +       +  +K+YK+   +D   +EINPL ETS    +A DAK+NFDDNA +R
Sbjct:    1 MNIHEYQAKHILSRFGVSVPKGAIVHSLSEVDDAISKLHS--KVIVVKAQIHAGGRGKA-------GGVVVCRTSDEAKASIKNMLGSTLVTHQTSKDGQKVRKVYLEEGCDIKKEYYISAIVNRKQSQVSIIFSTEGGVDIEEVASTSPEKVIVCNIDPLFGFQSFHGRNLCFDSNLSLDQTRKISDIAEKIYKVMLSTDANQVEINPLVETSSGNFIALDAKINFDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIAD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter sp. (strain ADP1) GN=sucC PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 4.430e-32
Identity = 83/235 (35.32%), Postives = 127/235 (54.04%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ KYG++V +G+   S +E   A + +    K  V+K+Q+ AGGRG         GGV +VK KEE  D A +++G  LVT QT   G+ V+ V +CE +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+      ++A DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKKYGVSVQEGILARSAEEAVAAFEQL--GGKFAVIKAQVHAGGRGKA-------GGVKVVKSKEEAADYANQLIGTNLVTYQTDANGQPVNSVLVCEDVYPVERELYLGAVVDRSSRRVTFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKLMAGAYQAFVENDFALFEINPLSVRENGDILAVDAKIGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EHRCR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ehrlichia chaffeensis (strain Arkansas) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKL-------YKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +NIHEYQ   +++K+G+NVPKG+ V S+ EV  A   +  + K +VVK+QI AGGRG         GGV + +  +E +     MLG  L+T QT   G+ V KVYL E  ++  E Y + +++RK     II  ++GG  IE++A   P  ++   I+   G        +         D N +++Q +K+       YK    +D   +EINPL ETS  + +A DAK+NFDDNA +R
Sbjct:    1 MNIHEYQAKHILSKFGVNVPKGVVVHSLGEVDGALSQL--NSKVVVVKAQIHAGGRGKA-------GGVVVSRTLDETKTSIKNMLGSTLITHQTSKDGQKVRKVYLEEGCNIKKEYYISAIVNRKQGQVSIIFSTEGGVDIEEVAATSPEKVIVCNINPVFGFQGFHGRNLC-------FDSNLSLDQTRKISDIAGKIYKAVLSTDANQIEINPLVETSSGEFIALDAKINFDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AQUAE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aquifex aeolicus GN=sucC PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.785e-32
Identity = 90/238 (37.82%), Postives = 133/238 (55.88%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV--FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            + +HE+Q  E+ AKYGI VP+G    S+ E K+  +++  FP    LVVK+QI  GGRG         GGV IVK  +E+E     +LG++L T Q  P GK V++V + +  ++  E Y AI LDR  + P+I+  + GG  IE++ ++ P  I+   ID   G+    A ++   L   V    +      KLY+++ + D +L+EINPL  T    L+A DAKL+ DDNA FR K
Sbjct:    1 MKLHEHQAKEIFAKYGIPVPEGKVAFSLKEAKEVAEELGEFP----LVVKAQIHCGGRGKA-------GGVKIVKDMDELEKAVESLLGKVLKTFQC-PDGKPVNRVLIEKATNIDKEYYLAITLDRSKSKPVIMASAAGGMEIEEIVKENPEAIIIETIDPELGLMPYQARELAFKLNLPV---KEFASIALKLYQIYSDLDASLVEINPLVLTKEGNLIALDAKLDIDDNALFRHK 223          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COXBU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii GN=sucC PE=3 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 86/236 (36.44%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L+ KY I VP    V + D    A   +  D    VVK+Q+ AGGRG         GGV +VK KEE++     +LG  LVT QT  +G+ V+++ + +   +  E+Y   ++DR +   + +  ++GG  IE +AEK P  I+KV ID   G+      ++  GL    +       + V  LY+LF E D +LLEINPL  T   +L+  DAK+N DD+A +RQ
Sbjct:    1 MNLHEYQSKHLLKKYNIPVPASEVVFNPDAAVDAAAKIGGDR--WVVKAQVHAGGRGKA-------GGVRLVKNKEELKSAVKALLGTRLVTYQTDERGQPVNQILVEQTSDIARELYLGAVIDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTIDPAIGLQPFQCRQLFFGLGLQDLKQMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COXBR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 86/236 (36.44%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L+ KY I VP    V + D    A   +  D    VVK+Q+ AGGRG         GGV +VK KEE++     +LG  LVT QT  +G+ V+++ + +   +  E+Y   ++DR +   + +  ++GG  IE +AEK P  I+KV ID   G+      ++  GL    +       + V  LY+LF E D +LLEINPL  T   +L+  DAK+N DD+A +RQ
Sbjct:    1 MNLHEYQSKHLLKKYNIPVPASEVVFNPDAAVDAAAKIGGDR--WVVKAQVHAGGRGKA-------GGVRLVKNKEELKSAVKALLGTRLVTYQTDERGQPVNQILVEQTSDIARELYLGAVIDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTIDPAIGLQPFQCRQLFFGLGLQDLKQMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COXB2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii (strain CbuG_Q212) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 85/236 (36.02%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L+ KY I VP    V + D    A   +  D    VVK+Q+ AGGRG         GGV +VK KEE++     +LG  LVT QT  +G+ V+++ + +   +  E+Y   ++DR +   + +  ++GG  IE +AEK P  I+KV +D   G+      ++  GL    +       + V  LY+LF E D +LLEINPL  T   +L+  DAK+N DD+A +RQ
Sbjct:    1 MNLHEYQSKHLLKKYNIPVPASEVVFNPDAAVDAAAKIGGDR--WVVKAQVHAGGRGKA-------GGVRLVKNKEELKSAVKALLGMRLVTYQTDERGQPVNQILVEQTSDIARELYLGAVIDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTVDPAIGLQPFQCRQLFFGLGLQDLKQMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMHC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter hominis (strain ATCC BAA-381 / LMG 19568 / NCTC 13146 / CH001A) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 89/236 (37.71%), Postives = 129/236 (54.66%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +NIHEYQ  EL  ++GINV  G    S DE  +  + +        VK+QI AGGRGLG       GGV I K  +EV+  A ++LG  LVTKQTGP+GK+V K+Y+ +  ++  E Y ++  +R      +I  + GG  IE++ +   N+I  + ID   G+    A +V D L       N   + +  LYKL+  +D  L+EINP+  T+  +  A DAK+ FDD A FR +
Sbjct:    1 MNIHEYQAKELCREFGINVSNGALALSADEAVEVAKKL--GGNVWAVKAQIHAGGRGLG-------GGVKIAKNLDEVKKYANQILGMTLVTKQTGPKGKLVRKIYIEQGCNIKKEFYVSLTFNRAKEQIGLIASASGGMGIEEVDK---NLIKTLNIDPQIGLKAFHAYEVGDFLGFDKDLNNKFYKFLNGLYKLYIATDANLVEINPMVLTAEDEFFALDAKMGFDDAALFRHE 224          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_GRAFK1.166e-3234.69Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ANADE3.392e-3235.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EHRCJ4.430e-3235.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIAD4.430e-3235.32Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EHRCR5.785e-3236.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AQUAE5.785e-3237.82Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COXBU7.556e-3236.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COXBR7.556e-3236.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COXB27.556e-3236.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMHC7.556e-3237.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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