FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ANASK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter sp. (strain K) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 83/234 (35.47%), Postives = 125/234 (53.42%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E++ K+G+ VP+G    +  E + A + +        VK+QI AGGRG G       GGV + +  +E    A  MLG +L T QTGP G+ V KVY+ E   +  E+Y  + LDR+     ++   +GG  IE++A K+P+ I++  I    G+    A ++  GL          +     LY  +  +D +L EINPL  T G +++A DAK+NFDDNA +R
Sbjct:    1 MKIHEYQAKEILRKFGVAVPRGYLAVTPLEAEGAARQLGGGIS--AVKAQIHAGGRGKG-------GGVKLARSPDEARQHAEAMLGMMLKTPQTGPDGQEVRKVYVEEGCRIARELYLGMTLDREIGRLAVMASVEGGVDIEEVAAKHPDKILREWISPLTGLMPFQARRLAFGLGLTGDSVTAFVRFATGLYNAYVATDASLAEINPLVITVGGEVLALDAKMNFDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ANAD2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 7.556e-32
Identity = 83/234 (35.47%), Postives = 125/234 (53.42%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E++ K+G+ VP+G    +  E + A + +        VK+QI AGGRG G       GGV + +  +E    A  MLG +L T QTGP G+ V KVY+ E   +  E+Y  + LDR+     ++   +GG  IE++A K+P+ I++  I    G+    A ++  GL          +     LY  +  +D +L EINPL  T G +++A DAK+NFDDNA +R
Sbjct:    1 MKIHEYQAKEILRKFGVAVPRGYLAVTPLEAEGAARQLGGGIS--AVKAQIHAGGRGKG-------GGVKLARSPDEARQHAEAMLGMMLKTPQTGPDGQEVRKVYVEEGCRIARELYLGMTLDREIGRLAVMASVEGGVDIEEVAAKHPDKILREWISPLTGLMPFQARRLAFGLGLTGDSVTAFVRFATGLYNAYVATDASLAEINPLVITVGGEVLALDAKMNFDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COXBN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii (strain Dugway 5J108-111) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 85/236 (36.02%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L+ KY I VP    V + D    A   +  D    VVK+Q+ AGGRG         GGV +VK KEE++     +LG  LVT QT  +G+ V+++ + +   +  E+Y   ++DR +   + +  ++GG  IE +AEK P  I+KV +D   G+      ++  GL    +       + V  LY+LF E D +LLEINPL  T   +L+  DAK+N DD+A +RQ
Sbjct:    1 MNLHEYQSKHLLKKYNIPVPASEVVFNPDAAVDAAAKIGGDR--WVVKAQVHAGGRGKA-------GGVRLVKNKEELKSAVKALLGTRLVTYQTDERGQPVNQILVEQTSDIARELYLGAVIDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTVDPAIGLQPFQCRQLFFGLGLQDLKQMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_COXB1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Coxiella burnetii (strain CbuK_Q154) GN=sucC PE=3 SV=1)

HSP 1 Score: 137.117 bits (344), Expect = 9.868e-32
Identity = 85/236 (36.02%), Postives = 127/236 (53.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA-PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ   L+ KY I VP    V + D    A   +  D    VVK+Q+ AGGRG         GGV +VK KEE++     +LG  LVT QT  +G+ V+++ + +   +  E+Y   ++DR +   + +  ++GG  IE +AEK P  I+KV +D   G+      ++  GL    +       + V  LY+LF E D +LLEINPL  T   +L+  DAK+N DD+A +RQ
Sbjct:    1 MNLHEYQSKHLLKKYNIPVPASEVVFNPDAAVDAAAKIGGDR--WVVKAQVHAGGRGKA-------GGVRLVKNKEELKSAVKALLGTRLVTYQTDERGQPVNQILVEQTSDIARELYLGAVIDRASQRIVFMASTEGGVEIEKVAEKSPEKILKVTVDPAIGLQPFQCRQLFFGLGLQDLKQMRSFTDIVMGLYRLFTERDLSLLEINPLVITGSGELICLDAKINIDDSALYRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PHOPR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Photobacterium profundum GN=sucC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.683e-31
Identity = 88/241 (36.51%), Postives = 132/241 (54.77%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ VP+G A  +  E  +A   +  D K  VVK Q+ AGGRG         GGV I   K+ V++ A K LG+ LVT QT  +G+ V+K+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I +  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEYGLPVPEGFACDTAQEAFEAAGRISTDKK--VVKCQVHAGGRGKA-------GGVEIHDTKDGVKEFAQKWLGKNLVTFQTDAKGQPVTKILVEEASNIANELYLGAVVDRATRRIVFMASTEGGVDIEKIAEETPELIHQAAIDPLVGPQPYQGRE----LAFKLGLVGDQIKQFVKIFLGLGNMFAQYDLALLEINPLVVTAEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAEPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=sucC PE=3 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.683e-31
Identity = 90/239 (37.66%), Postives = 131/239 (54.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVK----KLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQG ++ AKY + V +G+A  + DE  +A + +  D     +K Q+ AGGRG         GGV +V+ E EV + A K LG+ LVT QT   G+ V+ +Y+ E   +  E+Y   ++DR +   + +  S GG +IE++A K P ++ KV ID   G      A     LA K+    D I+Q      +L KLF E D +LLEINPL  T+   L+  DAK+  D NA +RQ
Sbjct:    1 MNLHEYQGKQIFAKYKLPVSQGIACKTADEAVEAIKQLKGD--AWAIKCQVHAGGRGKA-------GGVKLVRNEAEVREFADKWLGKRLVTFQTDANGQPVNTLYVEETAGIARELYLGAVIDRSSQKVVFMASSAGGMNIEEVAAKTPELLHKVAIDPLVG----GMAYQGRELAFKLGLTGDQIKQFSFIFTQLAKLFVEKDLSLLEINPLVVTTEGNLLCLDAKMVVDGNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_MARAV (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Marinobacter aquaeolei (strain ATCC 700491 / DSM 11845 / VT8) GN=sucC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 91/241 (37.76%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG+A  +  E   A  ++  D    VVK+Q+ AGGRG         GGV +VK KEE+ + A K LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P  I+K  ID   G       +    LA K+      I Q  K++    KLF E D  L+EINPL  T    L   DAK+  D NA +RQK+
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGIACDTPKEAVAAADEIGGDG--WVVKAQVHAGGRGKA-------GGVKLVKSKEEIREFAEKWLGKNLVTYQTDENGQPVSKILVESLTDIDQELYLGAVVDRGSRRIVFMASTEGGVEIEKVAEETPEKILKAEIDPLVGAQPYQGRE----LAFKLGLEGKQIGQFTKIFLGLAKLFEECDLALVEINPLVITPAGDLHCLDAKVGVDGNALYRQKK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CAMC5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Campylobacter curvus (strain 525.92) GN=sucC PE=3 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 2.198e-31
Identity = 79/236 (33.47%), Postives = 130/236 (55.08%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +NIHE+Q  E++ +YG+NV KG    ++++  +   D+  + +   +K+QI AGGRGL        GGV I   +E+    A K+LG  L+T QT   G +V K+Y+ E L+   E+Y ++  DR +    +I    GG SIE+ A++ P++I  + ID   G+      ++++ L       +     ++ LYK++   D  L+EINPL  T   +  A DAK++FDD+A FR +
Sbjct:    1 MNIHEFQAKEILKRYGVNVAKGAVAENLEQASEILNDL--EGEIFALKAQIHAGGRGLA-------GGVKIASSREQAIQFASKLLGMTLITPQTPKNGILVRKIYIEEGLNFKQEIYLSLAFDRNSEKISLIVSKDGGVSIEETAKQNPHLIKTISIDPQIGLCGFHTKELINFLQIDKILWSKLDTLLQNLYKIYIFKDANLIEINPLVLTQDDEFYALDAKMSFDDSALFRHE 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PASMU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pasteurella multocida GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.898e-31
Identity = 90/243 (37.04%), Postives = 132/243 (54.32%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDE----VKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  ++ A+Y + V KG A  S DE    +KK   DV+      V K Q+ AGGRG         GGV +V+ E EV   A + LGQ LVT QT   G+ V+ +Y+ E  S+  E+Y   +LDR +   + +  ++GG +IE++AEK P+++ K+ ID   G       +    LA K+  + D I+Q   ++    K+F E D  LLE+NPL  T    L+  DAK+  D NA +RQ
Sbjct:    1 MNLHEYQAKQIFAEYQLPVGKGYACKSADEAADAIKKLNGDVW------VAKCQVHAGGRGKA-------GGVKLVRNEAEVRAFADQWLGQRLVTFQTDVNGQPVNTLYVEEGSSIARELYLGAVLDRASQRVVFMVSTEGGVNIEEVAEKTPHLLHKMAIDPLTGGMPYQGRE----LAFKLGLKGDQIKQFAHIFVQMAKMFVEKDLALLEVNPLVVTKEGNLLCLDAKIVVDSNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAHCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Hahella chejuensis (strain KCTC 2396) GN=sucC PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 4.898e-31
Identity = 89/241 (36.93%), Postives = 127/241 (52.70%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A YG+ V KG A  S  E   A   +     + VVK+Q+ AGGRG         GGV +V  KEE++  A K LG  LVT QT  +G+ V+K+ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P  I+K  ID   G     A +    LA  +   +D ++Q  K++    KLF + D  LLE+NPL  T G  L   DAK+  D NA +RQ R
Sbjct:    1 MNLHEYQAKQLFADYGLPVSKGFACESAQEAMSAADSI--GGSQWVVKAQVHAGGRGKA-------GGVKLVSSKEEIKAFAEKWLGHNLVTYQTDEKGQPVNKILVESCTDIDQELYLGAVMDRGTRRIVFMASTEGGVEIEKVAEETPEKILKAVIDPLVGAQPYQARE----LAFALGLNSDQVKQFTKIFLGLAKLFQDLDLALLEVNPLVITKGGNLHCLDAKVVVDGNALYRQPR 228          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_ANASK7.556e-3235.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ANAD27.556e-3235.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COXBN9.868e-3236.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_COXB19.868e-3236.02Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PHOPR1.683e-3136.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEPS1.683e-3137.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARAV2.198e-3137.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAMC52.198e-3133.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PASMU4.898e-3137.04Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAHCH4.898e-3136.93Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
back to top