FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRATN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. novicida (strain U112) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRAT1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella tularensis subsp. tularensis (strain FSC 198) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 1.091e-30
Identity = 81/240 (33.75%), Postives = 128/240 (53.33%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G+ LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGKNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNSPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFIECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBCM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio cholerae serotype O1 (strain M66-2) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 88/241 (36.51%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V+  A K LG+ LVT QT   G+ VSK+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+  + D I+Q  K++    ++F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKAFAQKWLGKNLVTYQTDANGQPVSKILVEEASNIANELYLGAVVDRSTRRIVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLQGDQIKQFVKIFMGLGEMFAQYDLALLEINPLVITAEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio cholerae GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 88/241 (36.51%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V+  A K LG+ LVT QT   G+ VSK+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+  + D I+Q  K++    ++F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKAFAQKWLGKNLVTYQTDANGQPVSKILVEEASNIANELYLGAVVDRSTRRIVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLQGDQIKQFVKIFMGLGEMFAQYDLALLEINPLVITAEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBC3 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 88/241 (36.51%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V+  A K LG+ LVT QT   G+ VSK+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+  + D I+Q  K++    ++F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKAFAQKWLGKNLVTYQTDANGQPVSKILVEEASNIANELYLGAVVDRSTRRIVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLQGDQIKQFVKIFMGLGEMFAQYDLALLEINPLVITAEGNLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_TERTT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Teredinibacter turnerae (strain ATCC 39867 / T7901) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 90/239 (37.66%), Postives = 128/239 (53.56%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQG +L A+YG+ V KG+A  +  E   A   +  D    VVK+Q+ AGGRG         GGV +VK K E+E+ A + LG+ LVT QT   G+ VS++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P  I+K  ID   G     A      LA K+      I+Q  +++    K+F E D  LLEINPL  T    L   DAK+N D NA +RQ
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGVAAETPAEAASAAGILGGD--TWVVKAQVHAGGRGKA-------GGVKLVKSKAEIEEFAKQWLGKNLVTYQTDENGQPVSRILVETCTDIDQELYLGAVVDRSTRRIVFMASTEGGVEIEKVAEETPEKILKAIIDPLAGAQPYQAR----DLAFKLGLEGKQIKQFTQIFLGLAKMFKEKDLALLEINPLVITKEGDLHCLDAKINIDGNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEMY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas mendocina (strain ymp) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 85/241 (35.27%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +E  +A + +     E VVK+Q+ AGGRG         GGV +VK KE+ +  A   LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P  I+K  ID   G       +    LA ++    D ++Q   ++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACEKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVKSKEDAKAFAANWLGKRLVTYQTDANGQPVSKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHETPEKILKATIDPLVGAQPYQGRE----LAFQLGLEGDQVKQFTHIFVGLAKLFQDYDLALLEVNPLVIKADGNLHCLDAKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_MANSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mannheimia succiniciproducens (strain MBEL55E) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 86/239 (35.98%), Postives = 134/239 (56.07%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  ++ A+YG+ V +G A  S++E  +A + +     + V K Q+ AGGRG         GGV +VK +EEV     K LGQ LVT QT  +G+ V+ +Y+    ++  E+Y   +LDR +   + +  ++GG +IE++AEK P+++ K+PID   G       +    LA K+  +   I+Q  +++    K+F E D +LLEINPL      QL   DAK+  D NA +RQ
Sbjct:    1 MNLHEYQAKQIFAQYGLPVSEGCACQSLEEAIQAVKKL--GGGQWVAKCQVHAGGRGKA-------GGVKLVKSEEEVRSFFEKFLGQRLVTFQTDAKGQPVNAIYMEACANVKKELYLGAVLDRSSQRIVFMVSTEGGVNIEEVAEKTPHLLHKMPIDPLVGAMPYQGRE----LAFKLGLQGKQIQQFAQIFCQLGKMFVEKDLSLLEINPLVILDNDQLHCLDAKIVVDGNALYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_LEGPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Legionella pneumophila (strain Paris) GN=sucC PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.425e-30
Identity = 85/241 (35.27%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A YG+ VP+G    +V++       +       VVK+Q+ AGGRG         GGV +V  K+E+  +A  MLG  LVT QT  +G+ V+ + + E   +  E+Y   ++DR T   +I+  ++GG  IE +A + P  I KV +D   G+      +     A K+  ++D I+Q   L     K+F + D +LLEINPL  T   QL+  D K+N D NA FRQ +
Sbjct:    1 MNLHEYQAKQLFASYGLPVPRGEVAYNVEDALLVASQL--STSRWVVKAQVHAGGRGKA-------GGVKLVSSKDELAAVAKSMLGTRLVTYQTDARGQPVNAILVEETCEIDKELYLGAVVDRATRRVVIMASTEGGVEIEKVAHETPEKIFKVVVDPLVGVMPFQCRET----AFKLGLKDDQIKQFTHLMMGLGKMFVDCDLSLLEINPLVITKSGQLICLDGKINIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBVU (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio vulnificus GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 87/241 (36.10%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ V+K+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+  + D I+Q  K++    ++F + D  LLEINPL  T    L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTYQTDANGQPVTKILVEEASNIANELYLGAVVDRATRKVVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLQGDQIKQFVKIFMGLGEMFTQYDLALLEINPLVITGEGNLLCLDGKINIDSNALYRQPK 228          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_FRATN1.091e-3033.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRAT11.091e-3033.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBCM1.425e-3036.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBCH1.425e-3036.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBC31.425e-3036.51Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_TERTT1.425e-3037.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEMY1.425e-3035.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MANSM1.425e-3035.98Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_LEGPA1.425e-3035.27Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBVU1.861e-3036.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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