FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAES2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus somnus (strain 2336) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 85/238 (35.71%), Postives = 127/238 (53.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  +L A YG+ V KG    +V++   A + +     + + K QI AGGRG         GGV +VK  +EV     K LGQ LVT QT  QG+ + ++YL     +  E+Y + ++DR +   + +  S+GG  IE++AEK P+++ +V ID   G       +    LA K+      I+Q  +++    KLF E D +LLEINPL      +L   DAK+  DDNA +R
Sbjct:    1 MNLHEYQSKKLFADYGLPVTKGYVCENVEQALSAIEKL--SGSQWIAKCQIHAGGRGKA-------GGVKVVKSAQEVRSFFTKFLGQRLVTVQTNEQGQPIHQIYLEPCAEIQKELYLSAIIDRSSQRIVFMASSEGGMDIEEVAEKTPHLLHRVTIDPLVGAMPYQGRE----LAFKLGLSGKQIQQFSQIFCQLAKLFVEKDLSLLEINPLVILKNDELFCLDAKVVVDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAES1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus somnus (strain 129Pt) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 85/238 (35.71%), Postives = 127/238 (53.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ  +L A YG+ V KG    +V++   A + +     + + K QI AGGRG         GGV +VK  +EV     K LGQ LVT QT  QG+ + ++YL     +  E+Y + ++DR +   + +  S+GG  IE++AEK P+++ +V ID   G       +    LA K+      I+Q  +++    KLF E D +LLEINPL      +L   DAK+  DDNA +R
Sbjct:    1 MNLHEYQSKKLFADYGLPVTKGYVCENVEQALSAIEKL--SGSQWIAKCQIHAGGRGKA-------GGVKVVKSAQEVRSFFTKFLGQRLVTVQTNEQGQPIHQIYLEPCAEIQKELYLSAIIDRSSQRIVFMASSEGGMDIEEVAEKTPHLLHRVTIDPLVGAMPYQGRE----LAFKLGLSGKQIQQFSQIFCQLAKLFVEKDLSLLEINPLVILKNDELFCLDAKVVVDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_FRAP2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Francisella philomiragia subsp. philomiragia (strain ATCC 25017) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.861e-30
Identity = 81/240 (33.75%), Postives = 127/240 (52.92%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKL-SLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L+  YG+ V KG+   + +E  +A   +    K  VVK+Q+ AGGRG         GGV +VK  +E  ++A  ++G  LVT QT  +G+ V+ V + E +  +  E+Y   ++DR +     +  ++GG  IE++A   P  I+KV +D   G+    A +V   L  +    ND ++ +   YK F E D  L EINPLA     ++V  D K+N D NA +R  + L
Sbjct:    1 MNLHEYQAKDLLESYGLKVQKGIVAHNPNEAAQAFDQL--GGKFAVVKAQVHAGGRGKA-------GGVKVVKSSQEAREVAESLIGTNLVTFQTDAEGQPVNSVGVFEDVYPVTRELYLGAVVDRSSRKVTFMASTEGGVDIEEVAHNTPEKILKVEVDPLVGLQPFQAREVAFKLGLEGKQINDFVKTMLGAYKAFVECDFALFEINPLAVRENGEIVCVDGKINLDSNALYRHPKLL 231          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBVY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio vulnificus (strain YJ016) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 86/241 (35.68%), Postives = 131/241 (54.36%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ +P+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ V+K+ + E  ++ NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+  + D I+Q  K++    ++F + D  LLEINPL  T    L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPIPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTYQTDANGQPVTKILVEEASNIANELYLGAVVDRATRKVVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLQGDQIKQFVKIFMGLGEMFTQYDLALLEINPLVITGEGNLLCLDGKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBFM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio fischeri (strain MJ11) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ VSK+ + E  ++ NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTFQTDANGQPVSKILVEEASNIANELYLGAVVDRASQRIVFMASTEGGVDIEKIAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLEGDQIKQFVKIFMGLGNMFAQYDLALLEINPLVVTAEGSLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_VIBF1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 87/241 (36.10%), Postives = 130/241 (53.94%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A++G+ VP+G A  +  E  +A   +    K  VVK Q+ AGGRG         GGV +   KE V++ A K LG+ LVT QT   G+ VSK+ + E  ++ NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+    D I+Q  K++     +F + D  LLEINPL  T+   L+  D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEFGLPVPEGYACDTPQEAFEAAGRISTAKK--VVKCQVHAGGRGKA-------GGVELHDTKEGVKEFAQKWLGKNLVTFQTDANGQPVSKILVEEASNIANELYLGAVVDRASQRIVFMASTEGGVDIEKIAEETPELIHKAAIDPLVGPQAYQGRE----LAFKLGLEGDQIKQFVKIFMGLGNMFAQYDLALLEINPLVVTAEGSLLCLDGKINIDSNAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SACD2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 85/235 (36.17%), Postives = 122/235 (51.91%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQG +L A+YG+ V KG+A  +  E   A   +  D  + VVK+Q+ AGGRG         GGV +V  K E+E+ A K LG  L+T QT   G+ VS++ +     + +E+Y   ++DR T   I +  ++GG  IE +AE+ P  I+K  ID   G     A ++   L           +    L K+F + D  LLEINPL  T    L   DAK+  D NA +RQ
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGIAAETPAEAAAAADIIGGD--KWVVKAQVHAGGRGKA-------GGVKLVSSKAEIEEFAKKWLGNNLITYQTDENGQPVSRILVESCTDIADELYLGAVVDRSTRRVIFMASTEGGVEIEKVAEETPEKILKAIIDPLTGAQPYQARELGFKLGLNPVQIKQFTQIFLGLAKMFVDKDLALLEINPLVITDEGNLHCLDAKVAIDGNAMYRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.431e-30
Identity = 87/241 (36.10%), Postives = 129/241 (53.53%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +E  +A   +     E VVK+Q+ AGGRG         GGV +VK KE+ +  A + LG+ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+KV ID   G       +    LA ++  + D I+Q   ++    KLF + D  LLE+NPL       L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGFAVDTPEEAAEACDKI--GGSEWVVKAQVHAGGRGKA-------GGVKLVKSKEDAKAFAQQWLGKNLVTYQTDANGQPVSKILVESCTDIDKELYLGAVVDRSSRRIVFMASTEGGVDIEKVAHDTPEKILKVTIDPLVGAQPYQGRE----LAFQLGLKGDQIKQFTHIFVGLAKLFQDYDLALLEVNPLVIKKDGNLHCLDAKINIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEA6 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.175e-30
Identity = 85/237 (35.86%), Postives = 122/237 (51.48%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V +G A  +     +A   +     E VVK Q+ AGGRG         GGV +VK K+E++  A K LGQ LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P  I+K  ID   G     A ++   L  K        +    L KLF E D  L+E+NPL       L   DAK+  D NAA+RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSEGYAAETPQAAVEAADRI--GGTEWVVKCQVHAGGRGKA-------GGVKLVKNKDEIKAFAQKWLGQNLVTYQTDEAGQPVSKILVESCTDIAQELYLGAVVDRASRRVVFMASTEGGVEIETVAEETPEKILKAEIDPLVGAQPYQAREIAFKLGLKGVQIKQFTQIFMGLAKLFEEKDIALIEVNPLVIKDDGNLHCLDAKVAMDSNAAYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ALHEH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 3.175e-30
Identity = 80/231 (34.63%), Postives = 122/231 (52.81%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 718
            +N+HE+Q   L A Y I +P+G    S  E  +A   +       VVK+Q+ AGGRG         GGV ++K KEEVE+    +LG  LVT QT  +G+ +  V + + L +  E+Y   ++DR +     +G + GG  IE++A   P  I+ + +D   G       K+   L  +       ++ +K LY++F E D +++EINPL  T   QL+A DAK+N DDNA
Sbjct:    1 MNLHEFQAKHLFADYDIPIPQGYVARSSGEAVEAAGRL--GGSVWVVKAQVHAGGRGKA-------GGVKVLKTKEEVEEFTDSLLGSRLVTHQTDAKGQPIHAVLVEQGLDIARELYLGALVDRASKRVTFMGSAAGGMDIEEVAASTPEKILTLAVDPAAGFQAYQGRKMAFALGLEGKQIGQLVKIMKSLYRIFEEKDLSMIEINPLIVTGDGQLLALDAKVNVDDNA 222          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_HAES21.861e-3035.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAES11.861e-3035.71Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_FRAP21.861e-3033.75Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBVY2.431e-3035.68Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBFM2.431e-3036.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_VIBF12.431e-3036.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SACD22.431e-3036.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEAB2.431e-3036.10Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEA63.175e-3035.86Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ALHEH3.175e-3034.63Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
back to top