FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANCB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain B100) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 83/236 (35.17%), Postives = 116/236 (49.15%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LY+LF + D  L+EINPLA      L A D K + DDNAAFRQK
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTVTYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEU5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas stutzeri (strain A1501) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 82/237 (34.60%), Postives = 121/237 (51.05%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV S  E  +A   +     + VVK+Q+ AGGRG         GGV +V+ K+E    A + L + LVT QT   G+ VSK+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G     A ++   L  K       +     L +LF + D  LLE+NPL   +   L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDSPKEAAEACDKI--GGTQWVVKAQVHAGGRGKA-------GGVKLVRSKDEARAFAQQWLDKRLVTYQTDANGQPVSKILVEACTDIDKELYLGAVVDRASRRIVFMASTEGGVDIEKVAHDTPEKILKATIDPLVGAQPFQARELAFQLGLKGDQVKQFVHIFVGLAQLFQDYDLALLEVNPLVIKTDGNLHCLDAKINIDSNAIYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSEU2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. syringae (strain B728a) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 84/243 (34.57%), Postives = 127/243 (52.26%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+    A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G      A+   G  LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDTPEAAAEACDKI--GGTEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAHDTPEKILKATIDPLVG------AQPFQGRDLAFQLGLEGKQVTQFAKIFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSESM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. tomato GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 84/243 (34.57%), Postives = 127/243 (52.26%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+    A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G      A+   G  LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDTPEAAAEACDKI--GGTEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAHDTPEKILKATIDPLVG------AQPFQGRDLAFQLGLEGKQVTQFAKIFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_MARMS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Marinomonas sp. (strain MWYL1) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 84/241 (34.85%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ V  G AV + +   +A + +     + VVK+Q+ AGGRG         GGV +V   EEV       LG+ LVT QT   G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A +    LA K+      I+Q  K++    ++F + D  LLEINPL  T    L   D K+  D NA +RQK+
Sbjct:    1 MNLHEYQAKQLFAEYGLPVSTGYAVDTPEAAVEAAKKI--GGNKWVVKAQVHAGGRGKA-------GGVKLVDSYEEVAAFTQNWLGKNLVTYQTDANGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLVGAQPYQARE----LAFKLGLNPTQIKQFTKVFLGLSQMFHDYDFALLEINPLVITDEGNLHCLDGKIGIDSNAVYRQKK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_DESK1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 73/233 (31.33%), Postives = 127/233 (54.51%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + ++EY+G E+  KYGI  P+G+   SV++V KA +++  +   +V+KSQ+L GGRGL     G+K   ++   EE    A ++    +       +G+ V K+ + E + +  E+Y ++ +DR T   + +    GG  IE+LA K+P+ I+++P+D F G +   A   +  L  +          ++ +YK+  + D  L+E NPLA T   +L A DAK+  DDN+ +R
Sbjct:    1 MKLYEYEGKEIARKYGIETPRGILATSVEDVDKAYREL--NTGTVVLKSQVLVGGRGLA---GGVKKASNL---EEALTKARELFSMSI-------KGERVEKILVEEAVCISRELYMSLTVDRATRKLVYLASGMGGVEIEELARKHPDKILRIPVDPFIGYSGYMARHALGFLGLQWDKLGQLDNIMRAMYKIMIDYDAELVEFNPLAYTCDGRLTALDAKIIIDDNSLYR 218          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AERS4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aeromonas salmonicida (strain A449) GN=sucC PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.475e-27
Identity = 83/241 (34.44%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ V +G A A+  E  +A   +       VVK Q+ AGGRG         GGV + K K+E+   A   LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P +I K  ID   G     A +    LA K+    D I+Q  K++    ++F + D  LLEINPL  T+   L   D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKKLFAEYGLPVSEGYACATPQEAAEAADKI--GGTTWVVKCQVHAGGRGKA-------GGVKLAKSKDEIRAFAQNWLGKNLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRGSRRVVFMASTEGGVDIEKIAHETPELIHKAAIDPLVGPQAYQARE----LAFKLGLVGDQIKQFTKIFMGLGQMFLDCDFALLEINPLVITAQGNLHCLDGKINIDANALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANCP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 83/236 (35.17%), Postives = 116/236 (49.15%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LY+LF + D  L+EINPLA      L A D K + DDNAAFRQK
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_XANC8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Xanthomonas campestris pv. campestris (strain 8004) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 83/236 (35.17%), Postives = 116/236 (49.15%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            +N HEYQ  +L+A+YGI VP G   ++ DE  +    +       +VK+QI AGGRG         GGV   K  ++V+  A KMLG  + T QT      V+ V +     +V E+Y +I++DR T     I  S+GG  IE +A + P +I  + +D   G+           L             +  LY+LF + D  L+EINPLA      L A D K + DDNAAFRQK
Sbjct:    1 MNFHEYQSKQLLAEYGIPVPAGKVASTPDEAVEVANSL--GKGPWMVKAQIHAGGRGKA-------GGVKFCKTTDDVKAAADKMLGTKMSTYQTAGVELPVNLVLVTTAGEIVKELYLSILVDRGTKTITYIASSEGGVEIEQVAAETPELIHSLNVDFVEGVQGYHGRDFGFKLGLNAKQAGQFASIMVNLYRLFNDKDLALVEINPLAILDDGNLYALDGKFDSDDNAAFRQK 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SALAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 80/239 (33.47%), Postives = 122/239 (51.05%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIGKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_XANCB1.475e-2735.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEU51.475e-2734.60Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEU21.475e-2734.57Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSESM1.475e-2734.57Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MARMS1.475e-2734.85Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_DESK11.475e-2731.33Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AERS41.475e-2734.44Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANCP1.926e-2735.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_XANC81.926e-2735.17Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SALAR1.926e-2733.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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