FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEPA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=sucC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 81/237 (34.18%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L K+F + D  LLEINPL  T    +   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKALFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HALHL (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=sucC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 75/231 (32.47%), Postives = 121/231 (52.38%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNA 718
            +N+HE+Q   L  + GI +P+G    S  E + A + +       VVK+Q+ AGGRG         GGV ++++ +E+E  A  +LG+ LVT QT  +G+ +  + + E L +  E+Y   ++DR +   + +  + GG  IE++A   P  I  V +    G+      ++   L    A   D    ++ LY+LF E D +L+EINPL  T   +L+A DAK+  DDNA
Sbjct:    1 MNLHEFQAKHLFTEAGIAIPRGYVARSSAEARAAAERL--GGSAWVVKAQVHAGGRGKA-------GGVRVIQEGDEIERYADSLLGERLVTHQTDGRGQPIHALLVEEGLEIARELYLGALVDRASQRVVFMVSAAGGMDIEEVAASEPERIHTVRVHPAAGLQPYQCRQLGFALGLDKAQVGDLTRMMQGLYRLFLERDLSLVEINPLIVTGEGRLLALDAKVTVDDNA 222          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEHH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella halifaxensis (strain HAW-EB4) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 7.318e-27
Identity = 81/237 (34.18%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L K+F + D  LLEINPL  T    +   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKALFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PYRAR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.558e-27
Identity = 70/236 (29.66%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVV--DGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEY+  EL +KYG+ +P G    + +EV+K  +++      +V+K+Q++  GRG         GG+ + K  EE  +LA KM G  +       +G +V K+Y+ + + +  EMY ++++DR T   + +    GG  IE++A+  P  I +V +D   G+ D     +V   G  P+      A   V+ +Y +  + D  L+E NPLA T    ++  DA++  DDNA ++
Sbjct:    1 MKLHEYEAKELFSKYGVKIPPGRVATTPEEVRKIAEEI---GGPVVLKAQVVVAGRGKA-------GGIKVAKTPEEAYELATKMFGMNI-------KGLVVKKIYVTKYVEVEREMYLSLIIDRATRRYLFLASPIGGVDIEEIAKTQPEKIKRVYVDPSVGLRDYHVRSIVLWLGFKPETPQWRQASSIVQAMYNIMVDYDAELVESNPLAVTREGDVIPLDARVIVDDNALYK 219          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_IDILO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Idiomarina loihiensis GN=sucC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.558e-27
Identity = 81/241 (33.61%), Postives = 128/241 (53.11%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L  ++G+ V +G A  + DE  +A + +  D    VVK Q+ AGGRG         GGV +VK  ++V   A + LG+ LVT QT  +G+ V+K+ +     + +E+Y   ++DR +   + +  ++GG  IE +AE+ P  I+K  ID   G       +    L  K+    D ++Q  K++    K+F + D  LLEINPL  T    +   DAK+  D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFKEFGLPVSEGYACDTADEAVEAAKRIGGDI--WVVKCQVHAGGRGKA-------GGVKLVKSLDDVRAFAEQWLGKNLVTFQTDEKGQPVAKILVESCTDIADELYLGAVVDRASRKIVFMASTEGGVEIETVAEETPEKILKAEIDPTVGAQPYQGRE----LGFKLGLTPDQVKQFTKVFMGLAKMFEQYDLALLEINPLVITDEGNVHCLDAKVGIDSNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_HAEI8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Haemophilus influenzae (strain 86-028NP) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 9.558e-27
Identity = 81/239 (33.89%), Postives = 118/239 (49.37%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L   YG+ V  G    SV++V      +  D  +   K Q+ AGGRG         GGV +V+  EE    A K LGQ LVT QT   G+ V+++Y  E   +  E Y + ++DR +   + I    GG +IE++A+   +++ KV ID   G       ++   L           +    L +LF E D +L+E+NPL  T    LV  DAK++ DDNA FR K  L
Sbjct:    1 MNLHEYQAKQLFEHYGLPVKNGAVCQSVEDVDLVLAQLSGD--KWAAKCQVHAGGRGKA-------GGVKLVQDVEEARAFAEKWLGQRLVTFQTDKLGQPVNQIYFEETCDIDKEFYLSAVVDRASQKVMFIASPAGGMNIEEVAQNSLHLLHKVEIDPLFGGLPYQGRELAFKLGLSGTQNKQFTDIFMGLSRLFLEKDLSLVEVNPLVLTKQGYLVCLDAKISVDDNALFRHKDLL 230          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERE8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 81/239 (33.89%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I KV +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    LV  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDVHGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKVALDPLTGPQPYQGRE----LAFKLGLTGKQVAQFTKIFMGLATLFLERDLAMVEINPLVITKQGDLVCLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHESH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella sediminis (strain HAW-EB3) GN=sucC PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.248e-26
Identity = 80/237 (33.76%), Postives = 117/237 (49.37%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   K+E+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L K+F + D  LLEINPL  T    +   D K+  D NA FRQ++
Sbjct:    1 MNLHEYQAKALFAEYGLPVSEGFACDTPQEAVEAAGRIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGSKDEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALFRQEK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPY (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_YERPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Yersinia pseudotuberculosis GN=sucC PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.630e-26
Identity = 79/239 (33.05%), Postives = 120/239 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ +D   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKLVNSKEDIRAFAEQWLGKKLVTYQTDANGQPVHQILVEAATDIDKELYLGAVIDRSSRRVVFMASTEGGVEIEKVAEETPELIHKIALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SHEPA5.604e-2734.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HALHL5.604e-2732.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEHH7.318e-2734.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PYRAR9.558e-2729.66Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_IDILO9.558e-2733.61Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_HAEI89.558e-2733.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERE81.248e-2633.89Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHESH1.248e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPY1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_YERPS1.630e-2633.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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