FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PSE14 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.926e-27
Identity = 84/243 (34.57%), Postives = 127/243 (52.26%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDG--LAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQG +L A+YG+ V KG AV + +   +A   +     E VVK+Q+ AGGRG         GGV +V+ KE+    A + LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A   P  I+K  ID   G      A+   G  LA ++      + Q  K++    KLF + D  LLE+NPL   +   L   DAK+N D NA +RQ +
Sbjct:    1 MNLHEYQGKQLFAEYGLPVSKGYAVDTPEAAAEACDKI--GGTEWVVKAQVHAGGRGKA-------GGVKLVRSKEDAAAFAQQWLGKRLVTYQTDANGQPVTKILVESCTHIAKELYLGAVVDRSSRRIVFMASTEGGVDIEKIAHDTPEKILKATIDPLVG------AQPFQGRDLAFQLGLEGKQVTQFAKIFTGLAKLFQDHDLALLEVNPLVIKADGDLHCLDAKINIDANAMYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ACIBS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Acinetobacter baumannii (strain SDF) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 2.515e-27
Identity = 76/235 (32.34%), Postives = 123/235 (52.34%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVN-EMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +N+HEYQ   L+ +YG+ V +G+   + DE   A + +    K  V+K+Q+ AGGRG         GGV + K KE+V + A  ++   LVT QT   G+ V+ + + E +  V  E+Y   ++DR +     +  ++GG  IE +AE+ P  I+KV +D   G+    A +V   L  K       ++ +   Y+ F E+D  L EINPL+     +++  DAK+  D NA +R
Sbjct:    1 MNLHEYQAKALLKEYGMPVQEGILATNADEAVAAFEQL--GGKFAVMKAQVHAGGRGKA-------GGVKVAKSKEDVIEFANNIIRTRLVTYQTDANGQPVNSIIVAEDVYPVERELYLGAVVDRSSRRITFMASTEGGVEIEKVAEETPEKIIKVEVDPLVGLQPFQAREVAFALGLKDKQIGQFVKIMTAAYQAFVENDFALFEINPLSVRENGEILCVDAKVGIDSNALYR 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PECCP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 84/239 (35.15%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT  QG+ V ++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+      + Q  K++     LF E D  L+EINPL  T    LV  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVSNKEDIRAFAENWLGKKLVTYQTDAQGQPVHQILVEAATDIDKELYLGAVVDRGTRRVVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQPYQGRE----LAFKLGLSGKQVAQFTKIFMGLATLFLERDLALVEINPLVITKQGDLVCLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ERWT9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=sucC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 82/239 (34.31%), Postives = 121/239 (50.63%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P++I K+ +D   G       +    LA K+      + Q  K++     LF E D  L+EINPL  T    LV  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPTGYACTTPREAEEAASKIGAG--PWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDASGQPVNQILVEAATDIDKELYLGAVVDRGTRRVVFMASTEGGVEIEKVAEETPHLIHKMALDPLTGPQPYQGRE----LAFKLGLTGKQVGQFTKIFMGLATLFLERDLALVEINPLVVTKQGDLVCLDGKLTADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_ERWCT (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Erwinia carotovora subsp. atroseptica GN=sucC PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.285e-27
Identity = 83/239 (34.73%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT  QG+ V ++ +     +  E+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G       +    LA K+      + Q  K++     LF E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPTGYACTTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVSNKEDIRAFAENWLGKKLVTYQTDAQGQPVHQILVEAATDIDKELYLGAVVDRGTRRVVFMASTEGGVEIEKVAEETPELIHKAAIDPLVGPQPYQGRE----LAFKLGLSGKQVAQFTKIFMGLATLFLERDLALVEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BAUCH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=sucC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 82/242 (33.88%), Postives = 128/242 (52.89%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNG---ITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            + +HEYQ   L A+YGI +PKGL   + +E K++   +   +   +VK Q+ AGGRG         GGV IV+ KEE+++ A +  G+ L+T+QT   G+ VSK+ +   + +  E+Y   ++DR       I   +GG  IE++A++ P+++ ++ +D   G       D A  + GL+ K       I Q  K++     LF E D  + EINPL  T    L+  D KL+ D NA FRQ
Sbjct:    1 MKLHEYQAKMLFAQYGIPIPKGLVCTTPNEAKESIAVI--GYGPWIVKCQVHAGGRGKS-------GGVRIVRSKEEIQEFAKQWFGKHLITEQTNHIGQPVSKILVEAAIDIAQELYLGCLVDRSNQCIKFIASIQGGIDIENIAKEKPHLLHQIILDPLIGPQLYQSRDLAFKI-GLSSK-----KQINQFNKIFMGLATLFLEKDLVMAEINPLVITRLGDLICLDGKLHVDSNALFRQ 227          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_BACTN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bacteroides thetaiotaomicron GN=sucC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 79/238 (33.19%), Postives = 124/238 (52.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGL----AVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + IHEYQ  E+ +KYGI V +      A  +V   K+   D       +V+K+Q+L GGRG         GGV +V   E+    A  +LG  +       +G  V+++ + E + +  E Y +  +DR T   I++  + GG  IE++A + P  I++  ID F G+ D  A +    L P +         ++ LYK+F E+D +L+E+NPLA T+   L+A DAK+ FDDNA +R
Sbjct:    1 MKIHEYQAKEIFSKYGIPVERHTLCRTAAGAVAAYKRMGSD------RVVIKAQVLTGGRGKA-------GGVKLVDNTEDTYQEAKNILGMSI-------KGLPVNQILVSEAVDIAAEYYVSFTIDRNTRSVILMMSASGGMDIEEVARQSPEKIIRYAIDPFIGLPDYLARRFAFSLFPHIEQAGRMAAILQALYKIFMENDASLVEVNPLALTAKGILMAIDAKIVFDDNALYR 218          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_AERHH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=sucC PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 4.290e-27
Identity = 81/241 (33.61%), Postives = 125/241 (51.87%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ  +L A+YG+ V +G A A+  E  +A   +       VVK Q+ AGGRG         GGV + K K+E+   A   LG+ LVT QT   G+ V+K+ +     +  E+Y   ++DR +   + +  ++GG  IE +A + P +I K  +D   G     A +    LA K+    + I+Q  K++    ++F + D  LLEINPL  T+   L   D K+N D NA +RQ +
Sbjct:    1 MNLHEYQAKQLFAEYGLPVSEGYACATPQEAAEAADKI--GGNTWVVKCQVHAGGRGKA-------GGVKLAKSKDEIRAFAQNWLGKNLVTYQTDANGQPVTKILVESCTDIAKELYLGAVVDRGSRRVVFMASTEGGVEIEKVAHETPELIHKAALDPLVGPQPYQARE----LAFKLGLVGEQIKQFTKIFMGLGQMFLDCDFALLEINPLVITAQGNLHCLDGKINIDANALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHIDS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=sucC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 79/239 (33.05%), Postives = 121/239 (50.63%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +        VK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V+++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P++I KV +D   G       +    LA K+      ++Q  K++     +F E D  L+EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAG--PWGVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRE----LAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEPW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=sucC PE=3 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.604e-27
Identity = 81/237 (34.18%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L K+F + D  LLEINPL  T    +   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAENWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATQRVVFMASTEGGVEIETVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLTPTQMKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALFRQPK 228          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_PSE141.926e-2734.57Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ACIBS2.515e-2732.34Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PECCP3.285e-2735.15Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ERWT93.285e-2734.31Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_ERWCT3.285e-2734.73Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BAUCH4.290e-2733.88Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BACTN4.290e-2733.19Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_AERHH4.290e-2733.61Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHIDS5.604e-2733.05Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEPW5.604e-2734.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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