FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHESW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella sp. (strain W3-18-1) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEPC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHELP (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 80/237 (33.76%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   +   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKALFAEYGLPVSEGYACDTPQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKVFMGLATMFTDHDFALLEINPLVITTEGNIHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PROAC (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Propionibacterium acnes GN=sucC PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 70/235 (29.79%), Postives = 126/235 (53.62%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKE-EVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            ++++EYQ  +L  K+G+ V +G+   + ++  +A   +      + VK+Q+  GGRG         GGV I K   E  + A  +LG  +       +G  V KV + E   +  E YF+I+LDR     + +   +GG  IE LA++ P  + KVP+D  +G+ D  A +++       ++++  +  V KL++ + + D TL+E+NP+ +T   +++A D K+  D+NA+FRQ
Sbjct:    1 MDLYEYQARDLFEKHGVPVLRGIVAETPEQASEAAAKL--GTPVVAVKAQVKVGGRGKA-------GGVKIAKSAAEAAERAEAILGMDI-------KGHTVHKVMVAEGADIAEEYYFSILLDRGERRYLAMCSREGGMDIETLAKERPEALAKVPVDPIDGVDDAKAREILSEAGFPDSEQDAIVPAVLKLWETYRDEDATLVEVNPMIKTGDGRILAIDGKMTVDNNASFRQ 219          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC2_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-2 OS=Archaeoglobus fulgidus GN=sucC2 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.781e-26
Identity = 76/235 (32.34%), Postives = 125/235 (53.19%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQK 733
            + +HEYQ  ++ +K+GI V +G    SV++V+   +++     ++V+KSQ+L GGRG      G+K    +   EE  + A +M G +L       +G IV K+Y+ E + +  EMY  + +DR   G   I  S GG  IE++A K+P  I ++ ++   G+ D    +++           +    +K LY++    +  L+EINPL  T    LVAADA+LN DD+A FR +
Sbjct:    1 MRLHEYQAKQIFSKHGIRVARGELATSVEDVRGIAEEL---GGKVVLKSQVLVGGRGKA---GGIKKAYSV---EEAVEKAKEMFGSVL-------KGHIVEKIYVEEMIEVQREMYAGLTIDRANKGIAAILSSVGGMDIEEIAVKHPEKIARIAVNPKWGLWDYQIRELLLNSQMPREYWKEVASILKTLYRIMVHYEAELVEINPLVVTP-DGLVAADARLNIDDSALFRHR 218          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHESR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella sp. (strain MR-7) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHESM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella sp. (strain MR-4) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHESA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella sp. (strain ANA-3) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQAK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEAM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella amazonensis (strain ATCC BAA-1098 / SB2B) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 81/237 (34.18%), Postives = 116/237 (48.95%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A K LG+ LVT QT   G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L ++F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKALFAEYGLPVSEGYACDTPQEAVEAAGRI--GGNMWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEKWLGKNLVTYQTDENGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPIAGPQPFQARDLGFKLGLNPTQMKQFTKIFMGLAQMFLDHDFALLEINPLVITTEGNLHCLDGKIGVDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_KOCRD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 71/238 (29.83%), Postives = 124/238 (52.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRY 739
            +++ EYQ  +L  K+G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  EE  + A ++LG  +       +G  V +V + +   +  E YF+++LDR     + +   +GG  IE LA + P+ + +V +   +GIT+  A ++V+            I  + KL +++ + D TL+E+NPL +T   +++A D K++ DDNAAFR   +
Sbjct:    1 MDLFEYQARDLFEKHGVPVLAGIVATTPEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTPEEAYEYAQQILGMDI-------KGHTVHRVMIAQGADIAEEYYFSVLLDRANRSYLAMCSVEGGMEIEQLAVERPDALARVDVSPADGITEAKAREIVEQAKFDAETAEKVIPVLVKLGEVYAKEDATLVEVNPLVKTGDGEILALDGKVSLDDNAAFRHPEH 221          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SHESW2.781e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEPC2.781e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHELP2.781e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PROAC2.781e-2629.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC2_ARCFU2.781e-2632.34Succinyl-CoA ligase [ADP-forming] subunit beta-2 O... [more]
SUCC_SHESR3.632e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHESM3.632e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHESA3.632e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEAM3.632e-2634.18Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_KOCRD3.632e-2629.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
back to top