FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLAB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydophila abortus GN=sucC PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.632e-26
Identity = 71/237 (29.96%), Postives = 123/237 (51.90%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +++HEYQ  +L+  Y I +P     +SV+E +    ++  +    VVK Q+ AGGRG         GGV + K  EE+     ++L    V+ QT  +   V KV +   +++  E Y A+++DRK   P I+    GG  IE++A+KYP+  + + +  F  + +    +++  +  +       ++ +K L + F ++D +LLEINPL  T    L+  DAK+  DDNA +R  +
Sbjct:    1 MHLHEYQAKDLLTSYAIPMPPYRVASSVEEGRHTLNELGINAG--VVKVQVHAGGRGKN-------GGVIVAKSPEEILAAVDQLLHMRFVSNQTSGEALPVEKVLITPLVNIAAEYYLAVIMDRKNRCPTIMLSKAGGVDIEEVAQKYPDQQLTISLTPFARLYNYQLRQMIKFMGWEGDTGKQGVQMIKNLVQCFYDNDASLLEINPLVRTQEGDLLVLDAKVTIDDNALYRHPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_NATPD (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 73/235 (31.06%), Postives = 125/235 (53.19%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDV-FPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEYQ   + A  GI VP+    ++VDE  +A  D+ +P    + +K+Q+  GGRG         GG+ +V+  +E  + A ++LG  L       +G  V +V +   +   +E+Y  + +DR    P+ +  ++GG +IE++AE+ P+ IV+  ID   G+    A K         A  ND    + +LY+L+ + D T +E+NPL  T   +++AADA +N D++A FR
Sbjct:    1 MKLHEYQAKGVFADAGIPVPESTLASTVDEAVEAADDIGYP----VAIKAQVQVGGRGKA-------GGIKLVENADEAREAADEILGMDL-------KGLHVDRVLVEAAVDFTDELYVGVTMDRAAGKPVAMVSTRGGVNIEEVAEEDPDAIVREHIDPAFGMHPFQARKAAFEAGVDRAVANDVASILTQLYELWADKDATEIEVNPLMVTDDDEVIAADAVMNIDEDALFR 217          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_EDWI9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Edwardsiella ictaluri (strain 93-146) GN=sucC PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.744e-26
Identity = 80/241 (33.20%), Postives = 124/241 (51.45%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKRYL 742
            +N+HEYQ  +L A+YG+  P+G A ++  + ++A   +       VVK Q+ AGGRG         GGV  V+ KE +   A + LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +A+K P++I +V +D   G       ++    GL+ K A +   I     L  LF + D T+ EINPL  T    L+  D KL+ D NA FRQ   L
Sbjct:    1 MNLHEYQAKQLFAQYGLPTPEGYACSTPCQAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKCVESKEAIHAFAEQWLGKRLVTYQTDAHGQPVRQILVEGATEIARELYLGAVIDRSSRRVVFMASTEGGVEIEQVAQKTPHLIHRVALDPLTGPQPYQGRELAFKLGLSGKQAQQFGQI--FLGLATLFLQCDLTMAEINPLVITPQGDLLCLDGKLDVDSNALFRQPTLL 230          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEON (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella oneidensis GN=sucC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 80/237 (33.76%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGRI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEYWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHKAIIDPLTGPQPFQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 80/236 (33.90%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      V+KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +     I      ++   +     +AD+ + I  +++L + F E D +LLEINPL  T    LV  DAK+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVEAAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPVNKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTLPSSGKIYGYQLRRIAKFMEWDQPIADQGNRI--IRQLLQCFYEKDASLLEINPLVLTKDGSLVILDAKMTIDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLT2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 6.195e-26
Identity = 80/236 (33.90%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      V+KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +     I      ++   +     +AD+ + I  +++L + F E D +LLEINPL  T    LV  DAK+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVEAAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPVNKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTLPSSGKIYGYQLRRIAKFMEWDQPIADQGNRI--IRQLLQCFYEKDASLLEINPLVLTKDGSLVILDAKMTIDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SERP5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Serratia proteamaculans (strain 568) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 80/239 (33.47%), Postives = 119/239 (49.79%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLY----KLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQ 730
            +N+HEYQ  +L A+YG+  P G A  +  E ++A   +       VVK Q+ AGGRG         GGV +V  KE++   A   LG+ LVT QT   G+ V ++ +     +  E+Y   ++DR +   + +  ++GG  IE +AE+ P +I K+ ID   G       +    LA K+      + Q  K++     LF E D  ++EINPL  T    L+  D KL  D NA FRQ
Sbjct:    1 MNLHEYQAKQLFARYGMPAPTGYACTTPREAEEAASKI--GSGPWVVKCQVHAGGRGKA-------GGVKVVNSKEDIRAFAEAWLGKRLVTYQTDALGQPVHQILVEAATDIDKELYLGAVVDRASRRVVFMASTEGGVEIEKVAEETPELIHKMTIDPLAGPQPYQGRE----LAFKLGLTGKQVGQFAKIFMGLATLFLERDLAMVEINPLVVTKQGDLICLDGKLGADGNALFRQ 226          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_RENSM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Renibacterium salmoninarum (strain ATCC 33209 / DSM 20767 / IFO 15589) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 75/236 (31.78%), Postives = 122/236 (51.69%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVD--GLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++ EYQ  ++   +G+ V  G+   + +E K A + +       VVK+Q+  GGRG         GGV + K  +E  + AG +LG  +       +G  V KV + +   +  E YF+++LDR     + +   +GG  IE LA + P  + ++ +D   GI    A ++VD  G A  V D    IE +KKL+ +F + D TL+E+NPL +T   +++A D K+  D NA FR
Sbjct:    1 MDLFEYQARDMFEAHGVPVLAGIVANTAEEAKAAAEKI---GGVTVVKAQVKVGGRGKA-------GGVKVAKTADEAFEYAGNILGMDI-------KGHTVHKVMIAQGADIAEEYYFSVLLDRANRNYLAMCSVEGGVEIEVLAVERPEALARIAVDPAVGIDQAKAEEIVDAAGFAADVLD--GVIETIKKLWDVFQKEDATLVEVNPLVKTGDGRILALDGKVTLDANADFR 217          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTR (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 79/236 (33.47%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      ++KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +     I      ++   +     +AD+ + I  +++L + F E D +LLEINPL  T    LV  DAK+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVETAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPINKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTLPSSGKIYGYQLRRIAKFMEWDQPIADQGNRI--IRQLLQCFYEKDASLLEINPLVLTKDGSLVILDAKMTIDDNALYR 225          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_CHLTA (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Chlamydia trachomatis (strain A/HAR-13 / ATCC VR-571B) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 8.091e-26
Identity = 79/236 (33.47%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLA--PKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            +++HEYQ  +L+  Y + +P      SV EV+ A Q      K  VVK+Q+ AGGRG         GGV I    E++   A K+L     + QT      ++KV +   + + +E Y AI++DRK   P+I+    GG  IE++AEK P+ ++K+ +     I      ++   +     +AD+ + I  +++L + F E D +LLEINPL  T    LV  DAK+  DDNA +R
Sbjct:    1 MHLHEYQAKDLLTAYQLPIPPYHVATSVPEVETAIQA--EQWKAGVVKAQVHAGGRGKN-------GGVVIAHSPEDLLAAADKLLHMQFSSNQTAGLSLPINKVLISPLVEIASEYYLAIVIDRKHRCPVIMLSKAGGVDIEEVAEKQPDQLLKMTLPSSGKIYGYQLRRIAKFMEWDQPIADQGNRI--IRQLLQCFYEKDASLLEINPLVLTKDGSLVILDAKMTIDDNALYR 225          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_CHLAB3.632e-2629.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NATPD4.744e-2631.06Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_EDWI94.744e-2633.20Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEON6.195e-2633.76Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLTB6.195e-2633.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLT26.195e-2633.90Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SERP58.091e-2633.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RENSM8.091e-2631.78Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLTR8.091e-2633.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CHLTA8.091e-2633.47Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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