FC875593

Overview
NameFC875593
Unique NameFC875593
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length754
Libraries
Library NameType
CTVClemen1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig13233 contig Ccv1_Contig13233:240..994. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEDO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=sucC PE=3 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.057e-25
Identity = 79/237 (33.33%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVK-KEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   K+E+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE  P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTSSKDEIRAFAENWLGKNLVTYQTDAKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVDIETVAEHTPELIHTAIIDPLTGPQAYQARDLGFKLGLNPTQMKQFTKIFMGLANMFNDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SACEN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharopolyspora erythraea (strain NRRL 23338) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 71/237 (29.96%), Postives = 119/237 (50.21%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            ++++EYQ  EL A +G+    G      D  K A + +      +VVK+Q+  GGRG         GGV + +  +E +  A  +LG  +       +G I  +V +     +V+E YF+ +LDR     + +   +GG  IE++A   P  + K+ ID   G+ +  A ++VD         +  +E V KL++ F   D TL+EINPL +    +++A D K+  D+NA+FRQ +
Sbjct:    1 MDLYEYQAKELFASHGVPTLPGSVATDSDGAKAAAEQL---GGPVVVKAQVKTGGRGKA-------GGVKLAENPDEAKTKAEAILGLDI-------KGHITRRVLITTASDIVDEYYFSFLLDRANRNFLAMASVEGGMEIEEVAATKPEALAKIAIDPIQGVDEAKAREIVDAAKFPAEIADQVVEVVVKLWETFVAEDATLVEINPLVKDPQGKIIALDGKVTLDENASFRQPK 220          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC1_ARCFU (Succinyl-CoA ligase [ADP-forming] subunit beta-1 OS=Archaeoglobus fulgidus GN=sucC1 PE=3 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.354e-25
Identity = 76/234 (32.48%), Postives = 124/234 (52.99%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HE+Q  ++ AK+GI VP+G    S +E +K  + +      +VVK+QIL GGRG         GGV      EE +++A K+LG  +       +G  V KV + E+L++  E Y   ++D+ +  P +I    GG  +E++A K+P+ I ++  D   G+ D +  K +     +  +     + +KKL  +    +  L EINPLA T  +  +AADA+LN DDNA +R
Sbjct:    1 MRLHEHQAKQIFAKHGIRVPRGEVATSPEEAEKIAEKL---GGRVVVKAQILVGGRGKA-------GGVKKANSPEEAKEVAKKILGMTI-------KGHRVEKVLVEEQLNMRKEYYVGYVVDKSSRLPTVIFSRMGGMDVEEIAAKHPDAIHRIYFDPLWGLKDYEVRKALFRAGFEGEEFKQMFDIIKKLVDIAFAYEAELTEINPLAVTD-EGFLAADARLNTDDNALYR 216          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEWM (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella woodyi (strain ATCC 51908 / MS32) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 78/237 (32.91%), Postives = 115/237 (48.52%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +  D    VVK Q+ AGGRG         GGV +   K E+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR +   + +  ++GG  IE +AE+ P +I K  ID   G     A  +   L           +    L K+F + D  LLEINPL  T    +   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHIGGDM--WVVKCQVHAGGRGKA-------GGVKVTGDKNEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRASRRVVFMASTEGGVEIETVAEETPELIHKAIIDPLAGPQPYQARDLGFKLGLNPTQLKQFTKVFMGLAKMFEDHDFALLEINPLVITDEGNIHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB9 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS195) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB8 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS185) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEB2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella baltica (strain OS223) GN=sucC PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 3.075e-25
Identity = 78/237 (32.91%), Postives = 114/237 (48.10%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   KEE+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE+ P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA +RQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGDKEEIRAFAEHWLGKNLVTYQTDEKGQPVAKILVESCTDIANELYLGAVVDRATRRVVFMASTEGGVEIEKVAEETPELIHTAIIDPLTGPQGYQARDLGFKLGLNPTQMKQFTKIFMGLATMFVDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALYRQPK 228          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_PYRAE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pyrobaculum aerophilum GN=sucC PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 4.016e-25
Identity = 68/236 (28.81%), Postives = 123/236 (52.12%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIVKK-EEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPK--VADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFR 727
            + +HEY+  EL +KYG+ +P G    + +EV K  +++      +V+K+Q++  GRG         GG+ +    EE  +L+ +M G  +       +G IV K+Y+ + + +  EMY ++++DR +   + +    GG  IE++A+  P  I +V +D   G+ D     +V  L  K   +    A   V+ +Y++  + D  L+E NPLA T   +++  DA++  DDNA F+
Sbjct:    1 MKLHEYEAKELFSKYGVKIPPGKVALTPEEVLKIAREI---GAPVVLKAQVVVAGRGKA-------GGIKVANSPEEAYELSKRMFGMNI-------KGLIVKKLYVTKFVEVEREMYLSLIIDRASRRYLFLASPVGGMDIEEIAKTSPEKIKRVYVDPATGLRDYHVRSIVSWLGFKQGTSQWQQAASIVQAMYRIMVDYDAELVESNPLAVTKEGEVIPLDARVIVDDNALFK 219          
BLAST of FC875593 vs. ExPASy Swiss-Prot
Match: SUCC_SHEFN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Shewanella frigidimarina (strain NCIMB 400) GN=sucC PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.245e-25
Identity = 78/237 (32.91%), Postives = 113/237 (47.68%), Query Frame = 2
Query:   29 LNIHEYQGAELMAKYGINVPKGLAVASVDEVKKATQDVFPDHKELVVKSQILAGGRGLGTFKSGLKGGVHIV-KKEEVEDLAGKMLGQILVTKQTGPQGKIVSKVYLCEKLSLVNEMYFAIMLDRKTAGPIIIGCSKGGTSIEDLAEKYPNMIVKVPIDVFNGITDEDAAKVVDGLAPKVADRNDAIEQVKKLYKLFCESDCTLLEINPLAETSGKQLVAADAKLNFDDNAAFRQKR 736
            +N+HEYQ   L A+YG+ V +G A  +  E  +A   +       VVK Q+ AGGRG         GGV +   K+E+   A   LG+ LVT QT  +G+ V+K+ +     + NE+Y   ++DR T   + +  ++GG  IE +AE  P +I    ID   G     A  +   L           +    L  +F + D  LLEINPL  T+   L   D K+  D NA FRQ +
Sbjct:    1 MNLHEYQAKSLFAEYGLPVSEGFACDTAQEAVEAAGHI--GGNLWVVKCQVHAGGRGKA-------GGVKVTGNKDEIRAFAENWLGKNLVTYQTDAKGQPVAKILVESCTDIANELYLGAVVDRSTRRVVFMASTEGGVDIETVAEHTPELIHTAIIDPLTGPQAFQARDLGFKLGLNPTQMKQFTKIFMGLANMFNDHDFALLEINPLVITTEGNLHCLDGKIGIDGNALFRQPK 228          
The following BLAST results are available for this feature:
BLAST of FC875593 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_SHEDO1.057e-2533.33Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SACEN2.354e-2529.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC1_ARCFU2.354e-2532.48Succinyl-CoA ligase [ADP-forming] subunit beta-1 O... [more]
SUCC_SHEWM3.075e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB93.075e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB83.075e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB53.075e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEB23.075e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PYRAE4.016e-2528.81Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SHEFN5.245e-2532.91Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionC31405F07EF CTVClemen1 Citrus clementina cDNA clone C31405F07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC875593 ID=FC875593; Name=FC875593; organism=Citrus clementina; type=EST; length=754bp
CCAATGGCAGCAACAGCAGCTCCGCCGTCTCAATATCCACGAATATCAGG
GGGCTGAGTTGATGGCCAAATATGGAATCAATGTGCCCAAAGGACTCGCT
GTTGCTTCTGTTGATGAAGTCAAAAAGGCTACTCAGGATGTTTTTCCCGA
TCATAAGGAGCTGGTGGTTAAGAGCCAAATTTTGGCTGGTGGGAGAGGCT
TGGGTACTTTTAAGTCTGGTCTTAAGGGTGGGGTTCACATTGTTAAGAAA
GAAGAAGTTGAAGATTTAGCTGGGAAGATGCTTGGACAGATACTTGTCAC
CAAACAAACTGGTCCACAAGGCAAAATTGTCAGCAAGGTTTATTTGTGTG
AAAAGTTGTCACTTGTCAATGAGATGTACTTTGCTATCATGTTGGATCGT
AAAACTGCTGGCCCTATAATAATTGGTTGCAGCAAGGGAGGAACCAGCAT
TGAAGACCTTGCTGAGAAATATCCTAACATGATTGTTAAGGTGCCTATTG
ATGTTTTCAATGGAATCACTGATGAAGATGCTGCTAAGGTTGTTGATGGT
TTGGCGCCCAAGGTTGCTGATAGAAATGATGCAATTGAACAAGTGAAGAA
ACTGTATAAACTCTTTTGTGAGAGTGACTGCACATTATTGGAAATCAATC
CTCTAGCAGAGACTTCTGGTAAGCAGTTGGTGGCTGCTGATGCTAAGTTG
AATTTTGATGATAATGCTGCCTTCCGTCAGAAGAGATATTTGCTCTTCGT
GACC
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