FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURXL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia xenovorans (strain LB400) GN=metE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 1.232e-21
Identity = 45/104 (43.27%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI G+PR+G +RELKFA ESFW G+S    L+ V+ +LR+  W+   +AG+ ++    F+YYDQ+L+ +A+LGA+P R+ +    +    Y+ +ARGNA+ PA
Sbjct:    4 THIPGFPRIGAQRELKFAQESFWRGESGEPHLRGVARELRARHWQLQQDAGLDFVTVGDFAYYDQMLNLSALLGALPQRFGFEPKTLSLAEYYELARGNAAQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium paratuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.609e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            +VG PR+GPKRELK A E +W G++   +L+KV+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  ML A+P R      ++  D YF+ ARGN+ V
Sbjct:   10 VVGSPRIGPKRELKRATEGYWAGRTGRAELEKVAATLRRDTWAGLAAAGLDSVPVNTFSYYDQMLDTAVMLDALPERARQVSDDL--DRYFAAARGNSDV 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCA1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium avium (strain 104) GN=metE PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 1.609e-21
Identity = 49/100 (49.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            +VG PR+GPKRELK A E +W G++   +L+KV+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  ML A+P R      ++  D YF+ ARGN+ V
Sbjct:   10 VVGSPRIGPKRELKRATEGYWAGRTGRAELEKVAATLRRDTWAGLAAAGLDSVPVNTFSYYDQMLDTAVMLDALPERARQVSDDL--DRYFAAARGNSDV 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCTU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis GN=metE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            I G PR+GP+RELK A E +W G++S  +L+ V+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  +LGA+PPR   +    G D YF+ ARG   +
Sbjct:   14 ITGSPRIGPRRELKRATEGYWAGRTSRSELEAVAATLRRDTWSALAAAGLDSVPVNTFSYYDQMLDTAVLLGALPPRV--SPVSDGLDRYFAAARGTDQI 111          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCTA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=metE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            I G PR+GP+RELK A E +W G++S  +L+ V+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  +LGA+PPR   +    G D YF+ ARG   +
Sbjct:   14 ITGSPRIGPRRELKRATEGYWAGRTSRSELEAVAATLRRDTWSALAAAGLDSVPVNTFSYYDQMLDTAVLLGALPPRV--SPVSDGLDRYFAAARGTDQI 111          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCBP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=metE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            I G PR+GP+RELK A E +W G++S  +L+ V+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  +LGA+PPR   +    G D YF+ ARG   +
Sbjct:   14 ITGSPRIGPRRELKRATEGYWAGRTSRSELEAVAATLRRDTWSALAAAGLDSVPVNTFSYYDQMLDTAVLLGALPPRV--SPVSDGLDRYFAAARGTDQI 111          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCBO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium bovis GN=metE PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.102e-21
Identity = 48/100 (48.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            I G PR+GP+RELK A E +W G++S  +L+ V+A LR   W  ++ AG+  +P NTFSYYDQ+LDT  +LGA+PPR   +    G D YF+ ARG   +
Sbjct:   14 ITGSPRIGPRRELKRATEGYWAGRTSRSELEAVAATLRRDTWSALAAAGLDSVPVNTFSYYDQMLDTAVLLGALPPRV--SPVSDGLDRYFAAARGTDQI 111          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RALSO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia solanacearum GN=metE PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 3.586e-21
Identity = 46/99 (46.46%), Postives = 64/99 (64.65%), Query Frame = 1
Query:   52 HIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            H +GYPR+G +RELKFALESFW G S+  DL+     LR   W    +AG+ ++    F++YDQVL T A+LGA+P RY ++  ++     F +ARGNA
Sbjct:    5 HTLGYPRIGAQRELKFALESFWKGASTEADLRDTGRALRERHWNAQRDAGLDFVTVGDFAWYDQVLQTAALLGALPTRYGFDPAQLTLAQSFVLARGNA 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_NITEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Nitrosomonas europaea GN=metE PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 4.683e-21
Identity = 46/104 (44.23%), Postives = 67/104 (64.42%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +H +G+PR+G +RELK ALE++W G++  + L   +  +R+  W    +AGI  IP   FS YD +LD T +LGA+P R+   G +I  D+YF+MARG A  PA
Sbjct:    5 THNLGFPRIGAQRELKKALETYWKGQNDVDQLLATARAIRTGNWLLQQKAGIDLIPVGDFSLYDHILDMTTLLGAIPHRFGNTGDKISPDLYFAMARGTADQPA 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ACICJ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Acidiphilium cryptum (strain JF-5) GN=metE PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.116e-21
Identity = 46/95 (48.42%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +G+PR+G +RELK ALE+ W G+ S   LQ+ +  LR+         GI +IPSN F+ YD VLDT  M+GA+PP Y W GGE+    YF++ARG
Sbjct:    7 LGFPRIGRRRELKSALEAHWAGELSEAGLQEAARLLRAESHSLQQGLGIGHIPSNDFALYDHVLDTACMVGAIPPGYGWRGGEVTLPTYFALARG 101          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_BURXL1.232e-2143.275-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCPA1.609e-2149.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCA11.609e-2149.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTU2.102e-2148.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCTA2.102e-2148.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBP2.102e-2148.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCBO2.102e-2148.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALSO3.586e-2146.465-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_NITEU4.683e-2144.235-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ACICJ6.116e-2148.425-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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