FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAEQ (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=metE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G KRE K A+E++W  K    +L +   DL            +  IP   FS YD +LDT+ +   +P R+   G E+  D+ F +ARGN
Sbjct:    9 LGFPRLGRKREWKKAIENYWAHKIDKAELDQTLTDLHKENLLLQKNYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGREVNDDLLFDIARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LACPL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Lactobacillus plantarum GN=metE PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 2.576e-11
Identity = 35/101 (34.65%), Postives = 51/101 (50.50%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +GYPR+G  RE K  LE FW G+         +  LR +  K+  + G+ YIP    S YD VLDT     A+P R+     ++    Y+++ARG  +  A
Sbjct:    8 LGYPRLGEHREWKHLLEHFWKGQLDNVTFHATAKKLRLANLKKQRDLGVDYIPVADNSDYDHVLDTLVAFNAIPSRFGHFDHQLDLPDYYAIARGTDTAVA 108          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAA9 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain JH9) GN=metE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G  RE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRTREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STAA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Staphylococcus aureus (strain JH1) GN=metE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.364e-11
Identity = 36/96 (37.50%), Postives = 51/96 (53.12%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGN 345
            +G+PR+G  RE K A+ES+W  K S E+L +   DL            +  IP   FS YD +LDT+ +   +P R+   G  I  D+ F +ARGN
Sbjct:    9 LGFPRLGRTREWKKAIESYWAKKISKEELDQTLTDLHKENLLLQKYYHLDSIPVGDFSLYDHILDTSLLFNIIPERF--QGRTIDDDLLFDIARGN 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_HERA2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=metE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 39/102 (38.24%), Postives = 51/102 (50.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +VGYPR+G  R  K ALE FW GK      +    +L        ++  +  +P   FS YD VLDT  MLGAVP R+           YF++ARG   +PA
Sbjct:    7 VVGYPRVGVGRPYKQALERFWSGKLDETGFRAAINELCHDRLATQAQR-LDLVPVGDFSLYDHVLDTALMLGAVPARFGKVDAH-NLQGYFALARGRDGLPA 106          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BACP2 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Bacillus pumilus (strain SAFR-032) GN=metE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.494e-11
Identity = 35/95 (36.84%), Postives = 52/95 (54.74%), Query Frame = 1
Query:   58 VGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            +G+PR+G  RE K ALES+W G++  E L     +   +  K   +  I  +PS  F++YD VLDT  M   +P R+     +   D YF++ARG
Sbjct:    9 LGFPRIGLNREWKKALESYWKGQTDRETLLSTLDEQFLTAIKTQIDQQIDVVPSGDFTFYDHVLDTAVMFNWIPERF--RSLKDPLDTYFAIARG 101          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_STAEQ2.576e-1135.425-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LACPL2.576e-1134.655-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAA93.364e-1137.505-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STAA23.364e-1137.505-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_HERA27.494e-1138.245-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BACP27.494e-1136.845-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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