FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RALEU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia eutropha GN=metE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-21
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFA E+FW G  +  +L+ V+A LR   W+  ++ G+  + +  F+YYDQ+L  TA+LGA+P R+  +   +    YF +ARGN   PA
Sbjct:    4 THILGFPRIGERRELKFAQEAFWRGDRTEAELRDVAAQLRRRHWQLQADRGLDTVATGDFAYYDQMLSLTALLGALPRRFGLDPARLTLTQYFELARGNREQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_RALEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=metE PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 7.988e-21
Identity = 44/104 (42.31%), Postives = 68/104 (65.38%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI+G+PR+G +RELKFA E+FW G  +  +L+ V+A LR   W+  ++ G+  + +  F+YYDQ+L  TA+LGA+P R+  +   +    YF +ARGN   PA
Sbjct:    4 THILGFPRIGERRELKFAQEAFWRGDRTEAELRDVAAQLRRRHWQLQADRGLDTVATGDFAYYDQMLSLTALLGALPRRFGLDPARLTLTQYFELARGNREQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_STRAW (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Streptomyces avermitilis GN=metE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.043e-20
Identity = 46/100 (46.00%), Postives = 63/100 (63.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            + GYPR G  RELK A+E +W G+  A+ L+  +  LR   W+Q++EAGI  +P+  FSYYD VLDT+ M+GA+P R+         D YF+MARG   V
Sbjct:   14 VYGYPRQGRGRELKKAIEGYWKGRLDADALRTTATGLRRDTWQQLAEAGIHEVPTGDFSYYDHVLDTSVMVGAIPARHRAAVEADALDGYFAMARGTQDV 113          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_CHRSD (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 13768) GN=metE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.043e-20
Identity = 44/100 (44.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +HI+GYPR+G  RELK A+E++W G     +L++    LR+  W+   +AG+ ++    F++YDQVL+ +AMLGAVPPR+    G++  D  F MARG A
Sbjct:    4 AHILGYPRIGANRELKKAVEAYWKGDIDQAELERRGQALRAEHWQASRDAGLDFVTVGDFAFYDQVLNVSAMLGAVPPRFGAIDGDVDLDTTFRMARGRA 103          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_BURPP (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=metE PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.043e-20
Identity = 44/104 (42.31%), Postives = 71/104 (68.27%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +HI G+PR+G +RELKFA ESFW G+S  + L  V+ +LR+  W+   +A + ++    F+YYDQ+L+ +A+LGA+P R+ ++   +    Y+ +ARGNA+ PA
Sbjct:    4 THIPGFPRIGAQRELKFAQESFWRGESDEQYLLGVARELRARHWQLQQDAKLDFVTVGDFAYYDQMLNLSALLGALPQRFGFDAKTLSLARYYELARGNAAQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_MYCLE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Mycobacterium leprae GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 45/100 (45.00%), Postives = 67/100 (67.00%), Query Frame = 1
Query:   55 IVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASV 354
            + G PR+GP+RELK A E +W  ++S  +L+ V++ LR  +W  ++ AG+  +P NTFSYYDQ+LDT  MLGA+P R      ++  D YF++ARGN  +
Sbjct:   14 VTGSPRIGPRRELKRATEGYWAKRTSRSELESVASTLRRDMWSDLAAAGLDSVPVNTFSYYDQMLDTAFMLGALPARVAQVSDDL--DQYFALARGNNDI 111          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_FLAJ1 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=metE PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.779e-20
Identity = 49/102 (48.04%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   43 MASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYN-WNGGEIGFDVYFSMARGN 345
            M ++ +GYPR+G  RELK A E +W GK SA++L     ++R   W   SEAG+  IPSN FS+YDQVLD T  +GA+P RY+         D+YF+MARG+
Sbjct:    1 MKTNNLGYPRIGSNRELKKASELYWAGKISADELLDAGKEIRLKNWYLQSEAGVDLIPSNDFSFYDQVLDLTLAVGAIPQRYHELAKSNSSLDLYFAMARGS 102          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LISMO (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria monocytogenes GN=metE PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 2.324e-20
Identity = 48/107 (44.86%), Postives = 64/107 (59.81%), Query Frame = 1
Query:   40 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            K  S  +GYPR+G KRE K ALE FW+G  S E+L   +  LR    K+  E GI  IP   FS+YDQVLDT+   G +P R+  +GG++  + YF +ARG +   A
Sbjct:    3 KAISSNLGYPRLGEKREWKRALEKFWNGAISEEELLAETKALRLHALKKQQEKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIARGKSDAVA 109          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_METCA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Methylococcus capsulatus GN=metE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.964e-20
Identity = 44/104 (42.31%), Postives = 66/104 (63.46%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            +H +G+PR+G  RELK A+E+ W G++   +L +   +LR   W   S +GI  +P   F++YDQ+L+ TA+LGAVP R+ +    +  D YF +ARGNA  PA
Sbjct:    4 THSLGFPRIGAGRELKRAVEACWAGRTGPAELAQTGRELRERHWMIQSGSGIDLVPVGDFAWYDQMLNMTALLGAVPRRFGFQADALSLDQYFQLARGNAEQPA 107          
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ALHEH (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Alkalilimnicola ehrlichei (strain MLHE-1) GN=metE PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 3.964e-20
Identity = 41/100 (41.00%), Postives = 66/100 (66.00%), Query Frame = 1
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H++GYPR+G +RELK A E++W G+    +L++   +LR+  W+   +AG+ ++    F++YD VL+ +A+LGAVPPR+   G  +  D  F MARG A
Sbjct:    4 THVLGYPRIGARRELKRATEAYWKGEIDQAELERTGRELRARHWQAQRDAGLDWVTVGDFAFYDHVLNVSALLGAVPPRFGDAGETVDLDTTFRMARGRA 103          
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_RALEU7.988e-2142.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_RALEH7.988e-2142.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_STRAW1.043e-2046.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_CHRSD1.043e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_BURPP1.043e-2042.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_MYCLE1.779e-2045.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_FLAJ11.779e-2048.045-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISMO2.324e-2044.865-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_METCA3.964e-2042.315-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ALHEH3.964e-2041.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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