FC876162

Overview
NameFC876162
Unique NameFC876162
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length361
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10311 contig Ccv1_Contig10311:2..362. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_YEAST (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Saccharomyces cerevisiae GN=MET6 PE=1 SV=4)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 46/98 (46.94%), Postives = 62/98 (63.27%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARG 342
            S ++G+PR+GP RELK A E +W+GK + ++L KV  DLR+  WK   EAG+  IPSN FS+YDQVLD + +   +P RY         D  F+M RG
Sbjct:    4 SAVLGFPRIGPNRELKKATEGYWNGKITVDELFKVGKDLRTQNWKLQKEAGVDIIPSNDFSFYDQVLDLSLLFNVIPDRYT-KYDLSPIDTLFAMGRG 100
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_VIBPA (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Vibrio parahaemolyticus GN=metE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 46/100 (46.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +HI+GYPR+G KRELKFA E +W G     +L+KV ADLR+  W+  +EAG+ +  +  F++YD VL TT +LG VP R+   GG    D  F + RG +
Sbjct:    5 THILGYPRIGEKRELKFAQEKYWRGDIDQTELKKVGADLRAKNWQTQTEAGLSFTTAGDFAWYDHVLTTTLLLGHVPKRH--AGGFPNLDTLFKVGRGQS 102
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_PHOLL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Photorhabdus luminescens subsp. laumondii GN=metE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 44/100 (44.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G KRELK A E++W GK S ++L +   +LR+  W+Q  +AG+  +P   F++YD VL T+ +LG VPPR+    G I  D  F +ARG A
Sbjct:    5 NHTLGFPRIGLKRELKKAQENYWAGKISQQELLETGRELRARHWEQQKQAGVDLVPVGDFAWYDHVLTTSLLLGNVPPRHQNPDGTIDLDTLFRIARGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_LISIN (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Listeria innocua GN=metE PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.177e-20
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:   40 KMASHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNASVPA 360
            K  S  +GYPR+G KRE K ALE FW+G  S E+L   +  LR    K+  + GI  IP   FS+YDQVLDT+   G +P R+  +GG++  + YF +ARG +   A
Sbjct:    3 KAISSNLGYPRLGEKREWKRALEKFWNGAISEEELLAETKALRLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIARGKSDAVA 109
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SHISS (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella sonnei (strain Ss046) GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SHIFL (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_SHIF8 (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Shigella flexneri serotype 5b (strain 8401) GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ECOSM (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 64/100 (64.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W+Q  +AGI  +P   F++YD VL T+ +LG VP R+  N G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWEQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPARHQNNDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ECOSE (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli (strain SE11) GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLTVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104
[Close]
BLAST of FC876162 vs. ExPASy Swiss-Prot
Match: METE_ECOLU (5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=metE PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 6.762e-20
Identity = 44/100 (44.00%), Postives = 63/100 (63.00%), Query Frame = 1 
Query:   49 SHIVGYPRMGPKRELKFALESFWDGKSSAEDLQKVSADLRSSIWKQMSEAGIKYIPSNTFSYYDQVLDTTAMLGAVPPRYNWNGGEIGFDVYFSMARGNA 348
            +H +G+PR+G +RELK A ES+W G S+ E+L  V  +LR+  W Q  +AGI  +P   F++YD VL T+ +LG VPPR+    G +  D  F + RG A
Sbjct:    5 NHTLGFPRVGLRRELKKAQESYWAGNSTREELLAVGRELRARHWDQQKQAGIDLLPVGDFAWYDHVLTTSLLLGNVPPRHQNKDGSVDIDTLFRIGRGRA 104
The following BLAST results are available for this feature:
BLAST of FC876162 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 266
Match NameE-valueIdentityDescription
METE_YEAST5.177e-2046.945-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_VIBPA5.177e-2046.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_PHOLL5.177e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_LISIN5.177e-2043.935-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHISS6.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIFL6.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_SHIF86.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOSM6.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOSE6.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]
METE_ECOLU6.762e-2044.005-methyltetrahydropteroyltriglutamate--homocystein... [more]

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Properties
Property NameValue
Genbank descriptionC32001A06EF DevOvary1 Citrus clementina cDNA clone C32001A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876162 ID=FC876162; Name=FC876162; organism=Citrus clementina; type=EST; length=361bp
CTCGACTCTCAATTTCTCTGCTCTTCTTTCTCTGTTTGTAAAATGGCATC
TCACATCGTTGGATACCCACGCATGGGCCCCAAGAGGGAGCTCAAGTTCG
CGTTGGAATCCTTCTGGGATGGCAAGAGCAGCGCCGAGGATTTGCAAAAG
GTGTCCGCTGATCTCAGATCCTCCATCTGGAAACAGATGTCCGAGGCCGG
GATCAAATACATTCCCAGCAACACTTTCTCCTACTACGACCAAGTGCTCG
ACACCACCGCAATGCTCGGTGCCGTGCCACCTAGGTATAACTGGAACGGC
GGCGAGATTGGATTCGATGTTTACTTCTCCATGGCCAGAGGAAACGCCTC
TGTTCCCGCTA
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