FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB4_ORYSJ (Myb-related protein Myb4 OS=Oryza sativa subsp. japonica GN=MYB4 PE=2 SV=2)

HSP 1 Score: 188.348 bits (477), Expect = 3.406e-47
Identity = 95/186 (51.08%), Postives = 121/186 (65.05%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT--------------FWRPSSEKTLPVKVDVAAAGTGVASDRKAGKKIGSAIMKNKSHSKKDGNINIGT 680
            MGRAPCCEK+GLKKG WT EED +L  +IQ +G G+WR+LPK AGLLRCGKSCRLRWINYLR D+KRGN + EEE+ II LH  LGNRWS IA+ +PGRTDNEIKN W++HL +++                  +P S K    K   AAA    + +R A   +  + M + S +++ GN  I +
Sbjct:    1 MGRAPCCEKMGLKKGPWTPEEDKVLVAHIQRHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFSKEEEDTIIHLHELLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLDAPAQGGHVAASGGKKHKKPKSAK----KPAAAAAAPPASPERSASSSVTESSMAS-SVAEEHGNAGISS 181          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB1_MAIZE (Myb-related protein Zm1 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.096e-45
Identity = 94/168 (55.95%), Postives = 111/168 (66.07%), Query Frame = 3
Query:  162 GMGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVDVAAAGTGVASDRKAGKKIGSAIMKNKSHSKKDGN 665
            G GRAPCC KVGL +G WT +ED  L  YIQ +G  +WR+LPK AGLLRCGKSCRLRWINYLR DLKRGN T EEEE II+LH  LGN+WS IA+ +PGRTDNEIKN WN+HL +K+        EK        A AG+G A    A   + SA     +H+   G+
Sbjct:    2 GRGRAPCCAKVGLNRGSWTPQEDMRLIAYIQKHGHTNWRALPKQAGLLRCGKSCRLRWINYLRPDLKRGNFTDEEEEAIIRLHGLLGNKWSKIAACLPGRTDNEIKNVWNTHLKKKV-----AQREK------KKAGAGSGDAG-TPATAPLSSATSSTTTHNSSGGS 157          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 182.57 bits (462), Expect = 1.869e-45
Identity = 77/112 (68.75%), Postives = 95/112 (84.82%), Query Frame = 3
Query:  177 PCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            PCC K+G+K+G WT EED+IL  +I+  GEG WRSLPK AGLLRCGKSCRLRW+NYLR  +KRG IT++EE++I++LH  LGNRWSLIA  +PGRTDNEIKNYWN+HL +K+
Sbjct:   16 PCCTKMGMKRGPWTVEEDEILVSFIKKEGEGRWRSLPKRAGLLRCGKSCRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL 127          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.851e-44
Identity = 75/115 (65.22%), Postives = 95/115 (82.61%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            MGR  CC K G+K+G WT++EDD L  Y++A+GEG WR +P+ AGL RCGKSCRLRW+NYLR +++RGNI+ +EE++II+LH  LGNRWSLIA  +PGRTDNEIKNYWNS L R+
Sbjct:    1 MGRRACCAKEGVKRGAWTSKEDDALAAYVKAHGEGKWREVPQKAGLRRCGKSCRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRR 115          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB06_ANTMA (Myb-related protein 306 OS=Antirrhinum majus GN=MYB306 PE=2 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.339e-43
Identity = 77/126 (61.11%), Postives = 95/126 (75.40%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEK 542
            MGR PCC+K+G+KKG WT EED IL  YIQ +G G+WR++P N GLLRC KSCRLRW NYLR  +KRG+ T  EE++II L A LGNRW+ IAS +P RTDN+IKNYWN+HL +K+     P + K
Sbjct:    1 MGRPPCCDKIGVKKGPWTPEEDIILVSYIQEHGPGNWRAIPSNTGLLRCSKSCRLRWTNYLRPGIKRGDFTEHEEKMIIHLQALLGNRWAAIASYLPHRTDNDIKNYWNTHLKKKLEKLQSPENGK 126          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB2_PHYPA (Myb-related protein Pp2 OS=Physcomitrella patens GN=PP2 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 1.134e-42
Identity = 76/118 (64.41%), Postives = 93/118 (78.81%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHT 518
            MGR PCCEKVGL++G WT+EED  L  +I  NG   WR++PK AGLLRCGKSCRLRW NYLR DLKRG  +  EE +I+ LHA+LGNRWS IA+ +PGRTDNEIKNYWN+ L +++ +
Sbjct:    1 MGRKPCCEKVGLRRGPWTSEEDQKLVSHITNNGLSCWRAIPKLAGLLRCGKSCRLRWTNYLRPDLKRGIFSEAEENLILDLHATLGNRWSRIAAQLPGRTDNEIKNYWNTRLKKRLRS 118          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: ODO1_PETHY (Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 74/116 (63.79%), Postives = 94/116 (81.03%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            MGR PCC+K+G+KKG WTAEED  L  +I  NG+  WR++PK AGL RCGKSCRLRW NYLR DLKRG ++  EE+++I LH+ LGNRWS IA+ +PGRTDNEIKN+WN+H+ +K+
Sbjct:    1 MGRQPCCDKLGVKKGPWTAEEDKKLISFILTNGQCCWRAVPKLAGLKRCGKSCRLRWTNYLRPDLKRGLLSDAEEKLVIDLHSRLGNRWSKIAARLPGRTDNEIKNHWNTHIKKKL 116          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB39_ARATH (Transcription factor MYB39 OS=Arabidopsis thaliana GN=MYB39 PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.299e-42
Identity = 76/117 (64.96%), Postives = 94/117 (80.34%), Query Frame = 3
Query:  165 MGRAPCCEK-VGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            MGR+PCC++  G+KKG W  EEDD LT YI  NG G+WRSLPK AGL RCGKSCRLRW+NYLR D++RG  +  EE  I++LHA LGN+WS IA ++PGRTDNEIKNYWN+H+ +K+
Sbjct:    1 MGRSPCCDQDKGVKKGPWLPEEDDKLTAYINENGYGNWRSLPKLAGLNRCGKSCRLRWMNYLRPDIRRGKFSDGEESTIVRLHALLGNKWSKIAGHLPGRTDNEIKNYWNTHMRKKL 117          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB15_ANTMA (Myb-related protein 315 OS=Antirrhinum majus GN=MYB315 PE=2 SV=1)

HSP 1 Score: 166.392 bits (420), Expect = 1.386e-40
Identity = 76/116 (65.52%), Postives = 89/116 (76.72%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            M R PC EK GLK+G WT EED  LT Y+  NG   WR +PK AGL RCGKSCRLRW+NYLR DLK+G +T  EE  II+LHA LGNRWS IA ++PGRTDNEIKNYWN+H+ +K+
Sbjct:    1 MERQPCREKFGLKRGPWTEEEDQKLTSYVLKNGIQGWRVIPKLAGLSRCGKSCRLRWMNYLRPDLKKGPLTEMEENQIIELHAHLGNRWSKIALHIPGRTDNEIKNYWNTHIKKKL 116          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB86_ARATH (Transcription factor MYB86 OS=Arabidopsis thaliana GN=MYB86 PE=2 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 4.032e-40
Identity = 75/116 (64.66%), Postives = 90/116 (77.59%), Query Frame = 3
Query:  165 MGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            MGR  CC K  L+KG W+ EED+ L  YI  +G G W S+PK AGL RCGKSCRLRWINYLR DLKRG  + +EE +II+LHA+LGNRWS IA+ +PGRTDNEIKN+WNS L +K+
Sbjct:    1 MGRHSCCFKQKLRKGLWSPEEDEKLLNYITRHGHGCWSSVPKLAGLQRCGKSCRLRWINYLRPDLKRGAFSQDEESLIIELHAALGNRWSQIATRLPGRTDNEIKNFWNSCLKKKL 116          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYB4_ORYSJ3.406e-4751.08Myb-related protein Myb4 OS=Oryza sativa subsp. ja... [more]
MYB1_MAIZE1.096e-4555.95Myb-related protein Zm1 OS=Zea mays PE=2 SV=1[more]
MYB5_ARATH1.869e-4568.75Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
MYBC_MAIZE7.851e-4465.22Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
MYB06_ANTMA1.339e-4361.11Myb-related protein 306 OS=Antirrhinum majus GN=MY... [more]
MYB2_PHYPA1.134e-4264.41Myb-related protein Pp2 OS=Physcomitrella patens G... [more]
ODO1_PETHY3.299e-4263.79Protein ODORANT1 OS=Petunia hybrida GN=ODO1 PE=2 S... [more]
MYB39_ARATH3.299e-4264.96Transcription factor MYB39 OS=Arabidopsis thaliana... [more]
MYB15_ANTMA1.386e-4065.52Myb-related protein 315 OS=Antirrhinum majus GN=MY... [more]
MYB86_ARATH4.032e-4064.66Transcription factor MYB86 OS=Arabidopsis thaliana... [more]

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Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
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