FC876168

Overview
NameFC876168
Unique NameFC876168
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length720
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10301 contig Ccv1_Contig10301:1..720. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA_CHICK (Myb-related protein A OS=Gallus gallus GN=MYBL1 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 47/105 (44.76%), Postives = 65/105 (61.90%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L KG WT EED  + + +Q  G   W  + K+    R GK CR RW N+L  ++K+ + T  E+ +I + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK+
Sbjct:   85 LIKGPWTKEEDQRVIELVQKYGPKRWSLIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEAEDRVIYEAHKRLGNRWAEIAKLLPGRTDNSIKNHWNSTMRRKV 188          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB44_ARATH (Transcription factor MYB44 OS=Arabidopsis thaliana GN=MYB44 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.635e-20
Identity = 54/133 (40.60%), Postives = 74/133 (55.64%), Query Frame = 3
Query:  204 KGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTF---WRPSSEKTLPVKVDVAAAGTGVAS 593
            KG W+ EED+ L + +   G  +W  + K+    R GKSCRLRW N L   ++    +AEE+E I + HA  GN+W+ IA  + GRTDN +KN+WNS L RK   +       SE   PVK  V+A    V +
Sbjct:    6 KGPWSPEEDEQLRRLVVKYGPRNWTVISKSIPG-RSGKSCRLRWCNQLSPQVEHRPFSAEEDETIARAHAQFGNKWATIARLLNGRTDNAVKNHWNSTLKRKCGGYDHRGYDGSEDHRPVKRSVSAGSPPVVT 137          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYB_XENLA (Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 3.004e-19
Identity = 47/104 (45.19%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRK 509
            L KG WT EED  + + +   G   W  + K+    R GK CR RW N+L  ++K+ + T EE+  I + H  LGNRW+ IA  +PGRTDN IKN+WNS + RK
Sbjct:   87 LIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKG-RIGKQCRERWHNHLNPEVKKSSWTEEEDRTIYEAHKRLGNRWAEIAKLLPGRTDNAIKNHWNSTMRRK 189          

HSP 2 Score: 71.2478 bits (173), Expect = 6.068e-12
Identity = 40/121 (33.06%), Postives = 66/121 (54.55%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLL--RCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLG-NRWSLIASNMPGRTDNEIKNYWNSHLSRKI-HTFWRPSSEKTL 548
            L K RWT EED+ L K ++ NG   W+ +   A  L  R    C+ RW   L  +L +G  T EE++ +I+L    G  RWS+IA ++ GR   + +  W++HL+ ++  + W    ++T+
Sbjct:   35 LGKTRWTREEDEKLKKLVEQNGTEEWKVI---ASFLPNRTDVQCQHRWQKVLNPELIKGPWTKEEDQRVIELVHKYGPKRWSVIAKHLKGRIGKQCRERWHNHLNPEVKKSSWTEEEDRTI 152          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBQ_DICDI (Myb-like protein Q OS=Dictyostelium discoideum GN=mybQ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.924e-19
Identity = 49/107 (45.79%), Postives = 66/107 (61.68%), Query Frame = 3
Query:  195 GLKKGRWTAEEDDILTKYIQANGEGSWRSLP-KNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            G+ KG W  EED  L + +   G   W S+  K  G  R GK CR RW N+L  ++++ N T EE++III  HASLGN+W+ I+  + GR  N IKN+WNS L +KI
Sbjct:  274 GIVKGPWKDEEDAKLVELVNKCGPKEWSSIAAKIPG--RIGKQCRERWFNHLSPEVRKTNWTPEEDKIIIDAHASLGNKWTAISKMLDGRPANAIKNHWNSTLLKKI 378          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBAA_DICDI (Myb-like protein AA OS=Dictyostelium discoideum GN=mybAA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.491e-18
Identity = 46/119 (38.66%), Postives = 66/119 (55.46%), Query Frame = 3
Query:  156 LRGMGRAPCCEKVGLKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKI 512
            L+  GR+         KG WT EED+ L   +  +G   W+ +      LR G+ CR RW N L   +KR   T EE+ II+  H+  GN+W+ I+  +PGRT+  IKN+WNS + RK+
Sbjct:  741 LKKSGRSKSSSNESKAKGHWTKEEDEKLRSLVDLHGTKRWKYIASLL-CLRNGRQCRERWSNQLDPSIKRDAWTLEEDRIILDAHSKYGNKWAEISKLLPGRTNCAIKNHWNSTMKRKL 858          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MYBA_DICDI (Myb-like protein A OS=Dictyostelium discoideum GN=mybA PE=4 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 44/103 (42.72%), Postives = 63/103 (61.17%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSR 506
            L KG WT +EDD + + ++  G   W  +  +    R GK CR RW N+L  ++K+   + EE++II   HA  GN+W+ IA  +PGRTDN IKN+WNS + R
Sbjct:  199 LVKGAWTKDEDDKVIELVKTYGPKKWSDIALHLKG-RMGKQCRERWHNHLNPNIKKEAWSDEEDQIIRDQHAIHGNKWAEIAKFLPGRTDNAIKNHWNSSMKR 300          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: MB3R1_ARATH (Myb-related protein 3R-1 OS=Arabidopsis thaliana GN=MYB3R-1 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 39/109 (35.78%), Postives = 65/109 (59.63%), Query Frame = 3
Query:  198 LKKGRWTAEEDDILTKYIQANGEGSWRSLPKNAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFW 524
            L KG W+ EED+ +   ++  G   W ++ ++    R GK CR RW N+L   + +   T EEE  +I+ H   GN+W+ +   +PGR+DN IKN+WNS + +K+ +++
Sbjct:   85 LVKGPWSKEEDNTIIDLVEKYGPKKWSTISQHLPG-RIGKQCRERWHNHLNPGINKNAWTQEEELTLIRAHQIYGNKWAELMKFLPGRSDNSIKNHWNSSVKKKLDSYY 192          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: RS2_MAIZE (Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ RW  EED +L  Y++  G   W  + +  N  L R  KSC  RW NYLR  +K+G++T EE+ ++I+L A  GN+W  IA+ +PGRT   +  +W
Sbjct:    3 ERQRWRPEEDAVLRAYVRQYGPREWHLVSQRMNVALDRDAKSCLERWKNYLRPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWW 100          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: RS2_ORYSJ (Protein rough sheath 2 homolog OS=Oryza sativa subsp. japonica GN=RS2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 44/123 (35.77%), Postives = 66/123 (53.66%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYWNSHLSRKIHTFWRPSSEKTLPVKVD 563
            ++ RW  EED IL  Y++  G   W  + +  N  L R  KSC  RW NYLR  +K+G++T +E+ ++I+L A  GN+W  IA+ +PGRT   +  +W      K     R    + LP  +D
Sbjct:    8 ERQRWRPEEDAILLAYVRQYGPREWSLVSQRMNRPLHRDAKSCLERWKNYLRPGIKKGSLTDDEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEV-FKEKQQRELRDRDRRRLPPPLD 129          
BLAST of FC876168 vs. ExPASy Swiss-Prot
Match: AS1_ARATH (Transcription factor AS1 OS=Arabidopsis thaliana GN=AS1 PE=1 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.543e-15
Identity = 37/98 (37.76%), Postives = 59/98 (60.20%), Query Frame = 3
Query:  201 KKGRWTAEEDDILTKYIQANGEGSWRSLPK--NAGLLRCGKSCRLRWINYLRADLKRGNITAEEEEIIIKLHASLGNRWSLIASNMPGRTDNEIKNYW 488
            ++ RW+ EED +L  Y++  G   W  + +  N  L R  KSC  RW NYL+  +K+G++T EE+ ++I+L    GN+W  IA+ +PGRT   +  +W
Sbjct:    3 ERQRWSGEEDALLRAYVRQFGPREWHLVSERMNKPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQEKHGNKWKKIAAEVPGRTAKRLGKWW 100          
The following BLAST results are available for this feature:
BLAST of FC876168 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 72
Match NameE-valueIdentityDescription
MYBA_CHICK4.635e-2044.76Myb-related protein A OS=Gallus gallus GN=MYBL1 PE... [more]
MYB44_ARATH4.635e-2040.60Transcription factor MYB44 OS=Arabidopsis thaliana... [more]
MYB_XENLA3.004e-1945.19Myb protein OS=Xenopus laevis GN=myb PE=2 SV=1[more]
MYBQ_DICDI3.924e-1945.79Myb-like protein Q OS=Dictyostelium discoideum GN=... [more]
MYBAA_DICDI1.491e-1838.66Myb-like protein AA OS=Dictyostelium discoideum GN... [more]
MYBA_DICDI1.262e-1742.72Myb-like protein A OS=Dictyostelium discoideum GN=... [more]
MB3R1_ARATH4.796e-1735.78Myb-related protein 3R-1 OS=Arabidopsis thaliana G... [more]
RS2_MAIZE1.396e-1639.80Protein rough sheath 2 OS=Zea mays GN=RS2 PE=1 SV=... [more]
RS2_ORYSJ5.303e-1635.77Protein rough sheath 2 homolog OS=Oryza sativa sub... [more]
AS1_ARATH1.543e-1537.76Transcription factor AS1 OS=Arabidopsis thaliana G... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001B04EF DevOvary1 Citrus clementina cDNA clone C32001B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876168 ID=FC876168; Name=FC876168; organism=Citrus clementina; type=EST; length=720bp
GGCTCACAGTCCACTCCAAGAGCCAAGCAAAATACAAGCTCTGTTCACTC
ACCATCCCTTTTCCATCCACTTGCAAACACTTGTACGGGGGCTTTGTTAA
TATAACTAAATATATACGATTACATTTCGTTCTGTTTGAGAGCGTGGATG
CGTACTTAAGAGGAATGGGGAGAGCTCCGTGTTGCGAGAAAGTGGGTCTA
AAGAAGGGGAGATGGACGGCTGAAGAGGATGACATATTGACCAAGTATAT
TCAAGCTAACGGAGAAGGGTCATGGAGGTCACTGCCCAAGAATGCTGGGT
TGCTGAGGTGTGGGAAGAGTTGCAGATTGCGGTGGATCAATTACTTGAGA
GCTGACTTGAAGAGAGGTAACATTACTGCTGAAGAGGAAGAGATCATCAT
TAAGTTGCATGCATCTTTGGGTAACAGGTGGTCTTTAATTGCAAGCAATA
TGCCAGGTAGAACAGATAACGAGATAAAGAACTACTGGAACTCGCATTTG
AGCAGAAAAATTCACACCTTCTGGAGGCCATCTAGTGAAAAAACACTACC
AGTGAAGGTGGACGTGGCCGCCGCCGGCACAGGCGTTGCATCGGATAGGA
AAGCTGGCAAAAAAATTGGATCGGCAATTATGAAAAACAAAAGCCACAGT
AAGAAAGATGGTAATATTAATATCGGAACCCGAAGAATTGTTGCCAANGA
TGGTAATATTAATATCGGAA
back to top