FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_COCHE (Glyceraldehyde-3-phosphate dehydrogenase OS=Cochliobolus heterostrophus GN=GPD1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 61/122 (50.00%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK I+   ++DPA IPW + G  YVVES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVDIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTIRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_BRUMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia malayi GN=G3PD PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 1.470e-24
Identity = 62/125 (49.60%), Postives = 72/125 (57.60%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKL---IKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGRL                NDPFI+  YM YMFKYDSTHG FKG+++      +  NGK    I V + +DPAEIPWG  G +YVVES+GVF           GGAK   IS+ S
Sbjct:    5 KVGINGFGRIGRLVLRAAVEKDTVDVVAVNDPFINIDYMVYMFKYDSTHGRFKGSVSAEGGKLIVTNGKTTHHISVHNSKDPAEIPWGVDGAEYVVESTGVFTTTDKASAHLKGGAKKVIISAPS 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CURLU (Glyceraldehyde-3-phosphate dehydrogenase OS=Curvularia lunata GN=GPD PE=3 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 1.920e-24
Identity = 60/122 (49.18%), Postives = 71/122 (58.20%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDSTHG FKG I V D + L +NGK ++   ++DPA IPW + G  YVVES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVFRNAIEHNDVEIVAVNDPFIEPHYAAYMLKYDSTHGQFKGDIKV-DGNNLTVNGKTVRFHMEKDPANIPWSETGAYYVVESTGVFTTTEKAKAHLKGGAKKVVISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_GLOMM (Glyceraldehyde-3-phosphate dehydrogenase OS=Glossina morsitans morsitans GN=Gapdh PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 61/123 (49.59%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFID  YM Y+FKYDSTHG FKGT+   D   L +NGK I VF +RDP  I W   G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    2 SKIGINGFGRIGRLVLRAALDKGAEVVAV-NDPFIDVNYMVYLFKYDSTHGRFKGTV-AADGGFLVVNGKKITVFCERDPTNINWASAGAEYIVESTGVFTTIDKASAHFKGGAKKVVISAPS 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PX_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.508e-24
Identity = 61/126 (48.41%), Postives = 72/126 (57.14%), Query Frame = 1
Query:  358 GNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            G  K+GINGFGRIGRL                NDPFI  +YM YMFKYD+ HG +K + I + DD TL    K + VF  R+P EIPWG+ G DYVVES+GVF           GGAK   IS+ S
Sbjct:    2 GKIKIGINGFGRIGRLVARVALQSDDVELVAVNDPFITTEYMTYMFKYDTVHGHWKHSDIKLKDDKTLLFGEKPVTVFGVRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 127          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PHACH (Glyceraldehyde-3-phosphate dehydrogenase OS=Phanerochaete chrysosporium GN=GPD PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 58/122 (47.54%), Postives = 70/122 (57.38%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K GINGFGRIGR+                NDPFID +YM YMFKYDS HG FKG++    D  L + GK I VF+++DPA IPWG  G +Y+VES+GVF           G  K   IS+ S
Sbjct:    4 KAGINGFGRIGRIVLRNALLHGDIDVVAVNDPFIDLEYMVYMFKYDSVHGRFKGSVEA-KDGKLYVEGKPIHVFAEKDPANIPWGSVGAEYIVESTGVFTTTEKASAHLKGVCKKVIISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_DROHY (Glyceraldehyde-3-phosphate dehydrogenase OS=Drosophila hydei GN=Gapdh1 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 61/123 (49.59%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFID  YM Y+FK+DSTHG FKGT++  +   L +NG+ I VFS+RDPA I W   G +YVVES+GVF           GGAK   IS+ S
Sbjct:    2 SKIGINGFGRIGRLVLRAAVDKGASVVAV-NDPFIDVNYMVYLFKFDSTHGRFKGTVSA-EGGFLVVNGQKITVFSERDPANINWASAGAEYVVESTGVFTTTEKASTHLKGGAKKVVISAPS 122          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_CRYPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Cryphonectria parasitica PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 58/122 (47.54%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS HG FKG + V + S L + GK ++ +++RDPA IPW + G DY+VES+GVF           GGAK   IS+ S
Sbjct:    4 KVGINGFGRIGRIVFRNAHEHSDVEIVAVNDPFIEPHYAAYMLKYDSQHGNFKGDVTV-EGSDLVVGGKKVRFYTERDPAAIPWSETGADYIVESTGVFTTTEKAKAHLKGGAKKVIISAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 61/128 (47.66%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            S G  K+GINGFGRIGRL                NDPFI   YM YMFKYDS HG +K   + V D +TL    K + VF  R+P EIPWG+ GV+YVVES+GVF           GGAK   I++ S
Sbjct:    3 STGKIKIGINGFGRIGRLVARVALLRDDIELVAVNDPFISTDYMTYMFKYDSVHGQWKKHEVKVKDSNTLLFGEKAVTVFGCRNPEEIPWGETGVEYVVESTGVFTDKEKAAAHIKGGAKKVVITAPS 130          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P2_TRIKO (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Trichoderma koningii GN=gpd2 PE=1 SV=3)

HSP 1 Score: 112.079 bits (279), Expect = 3.275e-24
Identity = 57/122 (46.72%), Postives = 74/122 (60.66%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGR+                NDPFI+  Y AYM KYDS+HG+FKG + V D   L +NGK ++ +++R+PA+I W + G +YVVES+GVF           GGAK   IS+ S
Sbjct:    5 KVGINGFGRIGRIVFRNAVEHPDIEVVAVNDPFIETTYAAYMLKYDSSHGLFKGEVEV-DGKDLVVNGKKVRFYTERNPADIKWSETGAEYVVESTGVFTTTEKAKAHLVGGAKKVIISAPS 125          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_COCHE1.470e-2450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Cochli... [more]
G3P_BRUMA1.470e-2449.60Glyceraldehyde-3-phosphate dehydrogenase OS=Brugia... [more]
G3P_CURLU1.920e-2449.18Glyceraldehyde-3-phosphate dehydrogenase OS=Curvul... [more]
G3P_GLOMM2.508e-2449.59Glyceraldehyde-3-phosphate dehydrogenase OS=Glossi... [more]
G3PX_HORVU2.508e-2448.41Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_PHACH3.275e-2447.54Glyceraldehyde-3-phosphate dehydrogenase OS=Phaner... [more]
G3P_DROHY3.275e-2449.59Glyceraldehyde-3-phosphate dehydrogenase OS=Drosop... [more]
G3P_CRYPA3.275e-2447.54Glyceraldehyde-3-phosphate dehydrogenase OS=Crypho... [more]
G3PC_GINBI3.275e-2447.66Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_TRIKO3.275e-2446.72Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Tric... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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