FC876172

Overview
NameFC876172
Unique NameFC876172
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig15072 contig Ccv1_Contig15072:93..833. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_RHIMI (Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizomucor miehei GN=GPD PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 61/122 (50.00%), Postives = 72/122 (59.02%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K GINGFGRIGR+                NDPFID +YM YMFKYDSTHG FKGT+    D  L +NGK I V+++RDP  IP G  G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    4 KAGINGFGRIGRIVLRASLLNPEVEVVAINDPFIDLEYMVYMFKYDSTHGRFKGTVE-AKDGKLVVNGKPISVYAERDPCCIP-GRIGAEYIVESTGVFTTKEKAGAHLTGGAKKVIISAPS 123          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PT_DANRE (Glyceraldehyde 3-phosphate dehydrogenase, testis-specific OS=Danio rerio GN=gapdhs PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 61/121 (50.41%), Postives = 73/121 (60.33%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            VGINGFGRIGRL                NDPFID +YM YMFKYDSTHG +KG +++ +D  L ++G+ I VF    PAEIPWGD G  YVVES+GVF           GGAK   +S+ S
Sbjct:    6 VGINGFGRIGRLVLRACLQKGIKVTAI-NDPFIDLQYMVYMFKYDSTHGRYKGEVHM-EDGKLIVDGQAISVFQCMKPAEIPWGDAGALYVVESTGVFLSIEKASAHIQGGAKRVVVSAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_PHYPA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Physcomitrella patens GN=GAPC PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.530e-24
Identity = 59/123 (47.97%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGT-INVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            KVGINGFGRIGRL                NDPFI  +YM YMFKYDSTHG +K T + +  +  L   G  + V++ RDP+EIPWG +G D+VVES+GVF           GGAK   IS+ S
Sbjct:    8 KVGINGFGRIGRLVARVALERDDIELVAINDPFITPEYMTYMFKYDSTHGQWKKTEVTLHSEGHLTFGGNPVAVYACRDPSEIPWGKHGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 130          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_PETHY (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Petunia hybrida GN=GAPC PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.245e-23
Identity = 60/123 (48.78%), Postives = 69/123 (56.10%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKG-TINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   +   DD TL    K + VF  R+P EIPWG+ G DYVVES+GVF           GGAK   IS+ S
Sbjct:    5 KIGINGFGRIGRLVARVALQRDDVELVAVNDPFISVEYMTYMFKYDSVHGQWKHHELKAKDDKTLLFGEKPVTVFGIRNPEEIPWGEAGADYVVESTGVFTDKDKAAAHLKGGAKKVIISAPS 127          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_HOMAM (Glyceraldehyde-3-phosphate dehydrogenase OS=Homarus americanus PE=1 SV=2)

HSP 1 Score: 109.768 bits (273), Expect = 1.626e-23
Identity = 59/123 (47.97%), Postives = 73/123 (59.35%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHGVFKG +  ++D  L ++GK I VF++  P  IPW   G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    1 SKIGINGFGRIGRLVLRAALSCGAQVVAV-NDPFIALEYMVYMFKYDSTHGVFKGEVK-MEDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVVISAPS 121          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_AQUAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Aquifex aeolicus GN=gap PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 55/114 (48.25%), Postives = 73/114 (64.04%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAK 708
            KVGINGFGRIGR                 ND   DAK++A++ KYDS HG+FKG++   DDS + ++GK IKVF+++DP++IPWGD GVD V+E++GVF           GGAK
Sbjct:    4 KVGINGFGRIGRSFFRASWGREEIEIVAIND-LTDAKHLAHLLKYDSVHGIFKGSVEAKDDSIV-VDGKEIKVFAQKDPSQIPWGDLGVDVVIEATGVFRDRENASKHLQGGAK 115          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3PC_SINAL (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Sinapis alba GN=GAPC PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.123e-23
Identity = 59/128 (46.09%), Postives = 72/128 (56.25%), Query Frame = 1
Query:  352 SDGNTKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFK-GTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +D   K+GINGFGRIGRL                NDPFI  +YM YMFKYDS HG +K   + V D+ TL    K + VF  R+P +IPWG+ G D+VVES+GVF           GGAK   IS+ S
Sbjct:    2 ADKKIKIGINGFGRIGRLVARVILQRNDVELVAVNDPFITTEYMTYMFKYDSVHGQWKHNELKVKDEKTLLFGEKPVTVFGIRNPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPS 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_SCHMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 2.583e-23
Identity = 54/99 (54.55%), Postives = 64/99 (64.65%), Query Frame = 1
Query:  367 KVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVF 663
            KVGINGFGRIGRL                NDPFID +YM YM K DSTHG F G ++  ++  L++NGKLI V  +RDPA IPW   G +YVVES+GVF
Sbjct:    5 KVGINGFGRIGRLVLRAAFLKNTVDVVSVNDPFIDLEYMVYMIKRDSTHGTFPGEVST-ENGKLKVNGKLISVHCERDPANIPWDKDGAEYVVESTGVF 102          

HSP 2 Score: 21.1718 bits (43), Expect = 2.583e-23
Identity = 10/12 (83.33%), Postives = 11/12 (91.67%), Query Frame = 2
Query:  704 QKVGISAPSADA 739
            +KV ISAPSADA
Sbjct:  118 KKVIISAPSADA 129          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PICPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia pastoris GN=GPD PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.773e-23
Identity = 58/121 (47.93%), Postives = 70/121 (57.85%), Query Frame = 1
Query:  370 VGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            VGINGFGRIGRL                NDPFI  +Y AYMFKYDSTH  +KG ++    + + I+GK I VF +RDP  IPWG  GVDYV+ES+GVF            GAK   I++ S
Sbjct:    5 VGINGFGRIGRLVLRVALSRADIKVVAINDPFIAPEYAAYMFKYDSTHKAYKGEVSA-SGNKINIDGKEITVFQERDPVNIPWGKAGVDYVIESTGVFTTLEGAQKHIDAGAKKVVITAPS 124          
BLAST of FC876172 vs. ExPASy Swiss-Prot
Match: G3P_PANVR (Glyceraldehyde-3-phosphate dehydrogenase OS=Panulirus versicolor PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 4.730e-23
Identity = 58/123 (47.15%), Postives = 72/123 (58.54%), Query Frame = 1
Query:  364 TKVGINGFGRIGRLXXXXXXXXXXXXXXXXNDPFIDAKYMAYMFKYDSTHGVFKGTINVVDDSTLEINGKLIKVFSKRDPAEIPWGDYGVDYVVESSGVFXXXXXXXXXXXGGAKGGYISSIS 732
            +K+GINGFGRIGRL                NDPFI  +YM YMFKYDSTHG+FKG +   +D  L ++GK I VF++  P  IPW   G +Y+VES+GVF           GGAK   IS+ S
Sbjct:    1 SKIGINGFGRIGRLVLRAALEMGAQVVAV-NDPFIALEYMVYMFKYDSTHGMFKGEVKA-EDGALVVDGKKITVFNEMKPENIPWSKAGAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPS 121          
The following BLAST results are available for this feature:
BLAST of FC876172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 231
Match NameE-valueIdentityDescription
G3P_RHIMI9.530e-2450.00Glyceraldehyde-3-phosphate dehydrogenase OS=Rhizom... [more]
G3PT_DANRE9.530e-2450.41Glyceraldehyde 3-phosphate dehydrogenase, testis-s... [more]
G3PC_PHYPA9.530e-2447.97Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_PETHY1.245e-2348.78Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_HOMAM1.626e-2347.97Glyceraldehyde-3-phosphate dehydrogenase OS=Homaru... [more]
G3P_AQUAE2.123e-2348.25Glyceraldehyde-3-phosphate dehydrogenase OS=Aquife... [more]
G3PC_SINAL2.123e-2346.09Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_SCHMA2.583e-2354.55Glyceraldehyde-3-phosphate dehydrogenase OS=Schist... [more]
G3P_PICPA2.773e-2347.93Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PANVR4.730e-2347.15Glyceraldehyde-3-phosphate dehydrogenase OS=Panuli... [more]

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Properties
Property NameValue
Genbank descriptionC32001B08EF DevOvary1 Citrus clementina cDNA clone C32001B08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876172 ID=FC876172; Name=FC876172; organism=Citrus clementina; type=EST; length=740bp
ACTGCCTCCTGCCTCCTCTCGAAAGCCGCAACAACCCAAACCTCGTTAGG
GTTTTTGCGAGAAGAGAGCTCGAAACAGTGTGCTTAAGCTCAACAAATGG
CCTTCTCTTCTCTCCTCAGATCTACGGCCTCCGCTTCTCTCGTCCGCGCC
GACCTCACTTCCTCGCCGTCCGATCGCGTCAAGGGATCATCGACTGCTGC
TTTCAGTCGCAACCTTAACACTTCGAGCATTTTCGGTACTTCAGTTCCAA
GTGGTTCATCTTCTTCATCACTACAGACATGTGCTGCAAAGAGTATTCAA
CCCATCAGAGCCACAGCTACTGAAATTCCTCCAACAATTCAAAAATCACG
GAGTGATGGAAACACAAAGGTCGGAATCAATGGTTTTGGTCGGATTGGAA
GGTTGGTTTTGCGAGTAGCAGCCTTCAGGGATGATGTTGACGTTGTGGCG
GTCAATGATCCTTTTATTGATGCCAAATACATGGCTTACATGTTTAAGTA
TGATTCTACTCATGGAGTTTTCAAGGGAACCATCAATGTCGTGGATGACT
CCACCTTAGAAATTAATGGGAAGCTGATTAAAGTTTTCAGCAAAAGGGAC
CCGGCAGAGATCCCTTGGGGTGACTATGGGGTTGATTATGTTGTTGAATC
TTCTGGAGTCTTTACAACATTGCGAAGGCTTCAGCTCACATGAAGGGGTG
GTGCAAAAGGTGGGTATATCAGCTCCATCAGCTGATGCAC
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