FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHIB3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELLPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_KLEP3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Klebsiella pneumoniae (strain 342) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 90/161 (55.90%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E   +G SFGAP  +E  +AE+V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYHAARELIPGGVNSPVRAFTGVGGTPLFIERADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAASRGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_GEOSF (Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobacter sp. (strain FRC-32) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 94/159 (59.12%), Postives = 116/159 (72.96%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            S + F  A+  +PGGVNSPVRAFKSVG  P+      G  + D+DGN++ID+VGSWGP I+GH   QV +A+   +  G SFGAP  LE  LAEMVI+AVPSIEMVR V+SGTEA M  +RLAR +TGR++I +F GCYHGH+D  LVKAGSG AT G+
Sbjct:    6 SADLFKQAQNSIPGGVNSPVRAFKSVGRDPLFIKKASGCKIEDVDGNQFIDFVGSWGPMILGHCHPQVASAVKAAVDSGCSFGAPTELEITLAEMVINAVPSIEMVRMVSSGTEATMSAIRLARGYTGRDKILKFSGCYHGHSDSLLVKAGSGAATFGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESHY (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfitobacterium hafniense (strain Y51) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 95/164 (57.93%), Postives = 117/164 (71.34%), Query Frame = 2
Query:  206 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            F  + S+EAF  A  ++PGGVNSPVRAFKSVG +PI     +G+ +WDIDGN Y+DYV SWGP I+GHA   V+ A+    ++GTS+GAP  +E   AE VI A PS+EMVR V+SGTEA M  LRLAR  TGR +I +FEGCYHGH D  L+KAGSG  T G+
Sbjct:    3 FQDQRSKEAFARANGVLPGGVNSPVRAFKSVGREPIFIAKGQGARLWDIDGNSYLDYVLSWGPLILGHAHPVVVGAIKAAAERGTSYGAPTEIETECAEEVIKAFPSMEMVRMVSSGTEATMSALRLARGVTGRNKIIKFEGCYHGHGDSLLIKAGSGALTFGV 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_DESHD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 95/164 (57.93%), Postives = 117/164 (71.34%), Query Frame = 2
Query:  206 FTLKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            F  + S+EAF  A  ++PGGVNSPVRAFKSVG +PI     +G+ +WDIDGN Y+DYV SWGP I+GHA   V+ A+    ++GTS+GAP  +E   AE VI A PS+EMVR V+SGTEA M  LRLAR  TGR +I +FEGCYHGH D  L+KAGSG  T G+
Sbjct:    3 FQDQRSKEAFARANGVLPGGVNSPVRAFKSVGREPIFIAKGQGARLWDIDGNSYLDYVLSWGPLILGHAHPVVVGAIKAAAERGTSYGAPTEIETECAEEVIKAFPSMEMVRMVSSGTEATMSALRLARGVTGRNKIIKFEGCYHGHGDSLLIKAGSGALTFGV 166          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CITK8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=hemL PE=3 SV=2)

HSP 1 Score: 195.667 bits (496), Expect = 2.039e-49
Identity = 90/161 (55.90%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E   +G SFGAP  +E  +AE+V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAARGLSFGAPTEMEVKMAELVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHISS (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella sonnei (strain Ss046) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHIFL (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella flexneri GN=hemL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_SHIF8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigella flexneri serotype 5b (strain 8401) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ESCF3 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=hemL PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.663e-49
Identity = 89/161 (55.28%), Postives = 118/161 (73.29%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  SE  ++ A+EL+PGGVNSPVRAF  VGG P+  +   G++++D+DG  YIDYVGSWGP ++GH    +  A+ E  ++G SFGAP  +E  +A++V   VP+++MVR VNSGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MSKSENLYSAARELIPGGVNSPVRAFTGVGGTPLFIEKADGAYLYDVDGKAYIDYVGSWGPMVLGHNHPAIRNAVIEAAERGLSFGAPTEMEVKMAQLVTELVPTMDMVRMVNSGTEATMSAIRLARGFTGRDKIIKFEGCYHGHADCLLVKAGSGALTLG 161          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_SHIB32.039e-4955.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_KLEP32.039e-4955.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Klebsi... [more]
GSA_GEOSF2.039e-4959.12Glutamate-1-semialdehyde 2,1-aminomutase OS=Geobac... [more]
GSA_DESHY2.039e-4957.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_DESHD2.039e-4957.93Glutamate-1-semialdehyde 2,1-aminomutase OS=Desulf... [more]
GSA_CITK82.039e-4955.90Glutamate-1-semialdehyde 2,1-aminomutase OS=Citrob... [more]
GSA_SHISS2.663e-4955.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIFL2.663e-4955.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_SHIF82.663e-4955.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Shigel... [more]
GSA_ESCF32.663e-4955.28Glutamate-1-semialdehyde 2,1-aminomutase OS=Escher... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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