FC876179

Overview
NameFC876179
Unique NameFC876179
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length698
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10304 contig Ccv1_Contig10304:1..698. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_CHRVO (Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromobacterium violaceum GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 88/156 (56.41%), Postives = 111/156 (71.15%), Query Frame = 2
Query:  227 EAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            E F   K+++PGGVNSPVRAF  VGG P      +G++ WD DG +Y+DYVGSWGPAI+GHA  +V+ A+ +    G SFGAP   E V+AE +   +PS+E VR V+SGTEA M  +RLAR FTGR+ I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    6 ELFERGKQVIPGGVNSPVRAFGQVGGTPRFVARAEGAYFWDADGKQYLDYVGSWGPAIVGHAHPEVVKAVQDAAVGGLSFGAPTEGEVVIAEEICKLLPSVEQVRLVSSGTEATMTAIRLARGFTGRDLIVKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_ALKMQ (Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkaliphilus metalliredigens (strain QYMF) GN=hemL PE=3 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.616e-46
Identity = 87/161 (54.04%), Postives = 117/161 (72.67%), Query Frame = 2
Query:  215 KNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            + S++ F  ++E++PGGVNSPVRAF SVG  P      KG++++D DGN+YIDYVGSWGP I+GH   +V+  L   ++ GTSFGAP  +E  +AE++  A+PS+EM+R VNSGTEA M  LRLAR +TGR +I +F G YHGH+D  L+KAGSG  T G+
Sbjct:   10 ERSQKLFEASQEVIPGGVNSPVRAFSSVGMNPPFIKRGKGAYIYDEDGNKYIDYVGSWGPLILGHCHPEVVENLKAVLETGTSFGAPTEIELKIAELITGAIPSVEMIRMVNSGTEATMTALRLARGYTGRNKIVKFNGNYHGHSDGLLIKAGSGALTHGV 170          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBPA (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio parahaemolyticus GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A++ +PGGVNSPVRAF  VGG P+  +   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSSELYQKAQQTIPGGVNSPVRAFNGVGGSPLFIERADGALIFDADGRAYIDYVGSWGPMILGHNHAVIREAVIDAAQRGLSFGAPTEMEIAMAELVSELVPSMEQIRMVSSGTEATMSAIRLARGFTGRDKIMKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_VIBHB (Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=hemL PE=3 SV=2)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 87/161 (54.04%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  S E +  A++ +PGGVNSPVRAF  VGG P+  +   G+ ++D DG  YIDYVGSWGP I+GH    +  A+ +  ++G SFGAP  +E  +AE+V   VPS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGHAD  LVKAGSG  TLG
Sbjct:    1 MTKSSELYQKAQQTIPGGVNSPVRAFNGVGGSPLFIERADGALIFDADGKAYIDYVGSWGPMILGHNHAVIREAVIDAAQRGLSFGAPTEMEIAMAELVSELVPSMEQIRMVSSGTEATMSAIRLARGFTGRDKIMKFEGCYHGHADSLLVKAGSGALTLG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_THET8 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=hemL PE=1 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 92/159 (57.86%), Postives = 115/159 (72.33%), Query Frame = 2
Query:  221 SEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            SE  F  AK  +PGGV+SPVRAFK+VGG P      +G+++WD DGN Y+DYV SWGP I+GHA  +VLA + ET+++G +FGAP  LE  LA+ V  A P +++VRFVNSGTEA M  LRLAR +TGR  I +F G YHGHAD  LV+AGSG  TLG+
Sbjct:    6 SEAYFQEAKRHIPGGVSSPVRAFKAVGGTPPFLVRGEGAYVWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLERGLTFGAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYTGRPYIVKFRGNYHGHADGLLVEAGSGALTLGV 164          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_PSEU5 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudomonas stutzeri (strain A1501) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/162 (54.32%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +  SE  F  A+  +PGGVNSPVRAF+SVGG P+     +G+++ D D   Y+DYVGSWGP I+GH+  QVL A+   ++ G S+GAP  +E  +AE+V   VPS+EMVR V+SGTEA M  +RLAR +TGR+ I +FEGCYHGH+D  LVKAGSG  T G+
Sbjct:    1 MSRSETLFASAQTHIPGGVNSPVRAFRSVGGTPLFLKHAEGAYVIDEDDKRYVDYVGSWGPMILGHSHPQVLDAVRRQLEHGLSYGAPTAMETEMAELVCRLVPSMEMVRMVSSGTEATMSAIRLARGYTGRDAIIKFEGCYHGHSDSLLVKAGSGALTQGV 162          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIM0 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria meningitidis serogroup C (strain 053442) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  +AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAKIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIG2 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria gonorrhoeae (strain NCCP11945) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  +AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAEIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_NEIG1 (Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisseria gonorrhoeae (strain ATCC 700825 / FA 1090) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 88/161 (54.66%), Postives = 114/161 (70.81%), Query Frame = 2
Query:  212 LKNSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLG 694
            +  +E  F+ AK ++PGGVNSPVRAF SVGG P      +G+++WD +G  Y DYVGSWGPAI+GHA  +V+ A+ E    G SFGAP   E  +AE +   +PS+E +R V+SGTEA M  +RLAR FTGR++I +FEGCYHGH+D  LVKAGSG+ T G
Sbjct:    1 MNRNEILFDRAKAIIPGGVNSPVRAFGSVGGVPRFIKKAEGAYVWDENGTRYTDYVGSWGPAIVGHAHPEVVEAVREAALGGLSFGAPTEGEIAIAEQIAEIMPSVERLRLVSSGTEATMTAIRLARGFTGRDKIIKFEGCYHGHSDSLLVKAGSGLLTFG 161          
BLAST of FC876179 vs. ExPASy Swiss-Prot
Match: GSA_MYXXD (Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxococcus xanthus (strain DK 1622) GN=hemL PE=3 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.110e-46
Identity = 87/160 (54.37%), Postives = 117/160 (73.12%), Query Frame = 2
Query:  218 NSEEAFNVAKELMPGGVNSPVRAFKSVGGQPIVFDSVKGSHMWDIDGNEYIDYVGSWGPAIIGHADDQVLAALGETMKKGTSFGAPCLLENVLAEMVISAVPSIEMVRFVNSGTEACMGVLRLARAFTGRERIXQFEGCYHGHADPFLVKAGSGVATLGL 697
            +S+  F  A+  +PGGVNSPVRAF+ VGG P+ F    G+ + D+DGN Y+D VGSWGP I+GHA   +L A+ +  ++G+S+GAP   E   AE++ + +P++EMVR V+SGTEA +  +R+AR FTGRE I +FEGC+HG  DPFLVKAGSGV TLGL
Sbjct:    5 HSQALFARAQARIPGGVNSPVRAFRGVGGDPVFFREGAGAWLTDVDGNRYVDLVGSWGPLILGHAYPPILDAIIDAARRGSSYGAPHADEVEFAELICATMPAVEMVRLVSSGTEATVAAIRVARGFTGREHILKFEGCFHGAGDPFLVKAGSGVETLGL 164          
The following BLAST results are available for this feature:
BLAST of FC876179 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GSA_CHRVO1.616e-4656.41Glutamate-1-semialdehyde 2,1-aminomutase OS=Chromo... [more]
GSA_ALKMQ1.616e-4654.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Alkali... [more]
GSA_VIBPA2.110e-4654.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_VIBHB2.110e-4654.04Glutamate-1-semialdehyde 2,1-aminomutase OS=Vibrio... [more]
GSA_THET82.110e-4657.86Glutamate-1-semialdehyde 2,1-aminomutase OS=Thermu... [more]
GSA_PSEU52.110e-4654.32Glutamate-1-semialdehyde 2,1-aminomutase OS=Pseudo... [more]
GSA_NEIM02.110e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_NEIG22.110e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_NEIG12.110e-4654.66Glutamate-1-semialdehyde 2,1-aminomutase OS=Neisse... [more]
GSA_MYXXD2.110e-4654.38Glutamate-1-semialdehyde 2,1-aminomutase OS=Myxoco... [more]

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Properties
Property NameValue
Genbank descriptionC32001C05EF DevOvary1 Citrus clementina cDNA clone C32001C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876179 ID=FC876179; Name=FC876179; organism=Citrus clementina; type=EST; length=698bp
GACAGTTTCTTATCTTGATTGACCGAGGAAAAGAGAAAGAGACATCAGAG
AGAGTGACACAAAAATGGCAGCTACAATTACAGGGGTAGGAGTTGGGTTA
GGGCTTTCATGTTCATCAAAGCTCACCAAGAGATTTTCTTCTTCTACTGG
ATCCTCTCGCTGTAGTGTTAAAATGTCGGTCTCTGTTGAGGAGCAGAAGA
AAAATTTCACTTTAAAAAACTCTGAAGAAGCTTTCAATGTCGCCAAGGAA
TTGATGCCTGGAGGTGTAAATTCACCTGTACGTGCCTTCAAATCTGTTGG
TGGTCAACCTATTGTGTTTGATTCCGTCAAGGGCTCACACATGTGGGATA
TCGATGGCAACGAGTACATTGACTATGTAGGTTCTTGGGGGCCGGCAATT
ATTGGTCACGCAGATGATCAGGTACTAGCAGCCTTGGGTGAAACAATGAA
GAAAGGAACCAGCTTTGGTGCTCCTTGTCTTCTAGAGAATGTTCTTGCAG
AAATGGTAATCTCAGCTGTTCCAAGCATAGAAATGGTTCGTTTTGTTAAC
TCAGGCACAGAAGCATGCATGGGTGTGCTTCGCCTTGCCCGTGCCTTCAC
TGGGAGAGAGAGGATCATNCAATTTGAGGGTTGTTATCATGGCCATGCTG
ATCCATTTCTTGTCAAGGCTGGTAGTGGAGTTGCCACCCTAGGGCTTC
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