FC876181

Overview
NameFC876181
Unique NameFC876181
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10305 contig Ccv1_Contig10305:1..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1A_MOUSE (GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.928e-43
Identity = 94/184 (51.09%), Postives = 112/184 (60.87%), Query Frame = 3
Query:  183 FLLDWFYG----VLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            F+ +W Y     VL  LGL++K  K++FLGLDNAGKTTLL MLKD+RL QH PT +PTSEEL+I  + F  FDLGGH+ ARRVW                    R  ESK             NVP L+LGNKID   A SEE+LR   GL   TTGKG V L ELN RP+EVFMCS++++ GY
Sbjct:    3 FIFEWIYNGFSSVLQFLGLYKKSGKLVFLGLDNAGKTTLLQMLKDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHEQARRVWKNYLPAINGIVFLVDCADHSRLMESKVELNALMTDETISNVPILILGNKIDRTDAISEEKLREIKGLYGQTTGKGNVTLKELNARPMEVFMCSVLKRQGY 186          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_KLULA (Small COPII coat GTPase SAR1 OS=Kluyveromyces lactis GN=SAR1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.493e-42
Identity = 95/179 (53.07%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  186 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             NVPF VLGNKID P A SE ELR  LGL N TTG  ++       RP+E+FMCS+V K GY
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHLQARRLWKDYFPEVNGIVFLVDAADPERFNEARIELDALFQIKELDNVPFAVLGNKIDSPSAVSETELRAALGLMN-TTGYTKIE----GQRPIELFMCSVVMKSGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_YEAST (Small COPII coat GTPase SAR1 OS=Saccharomyces cerevisiae GN=SAR1 PE=1 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.546e-42
Identity = 94/179 (52.51%), Postives = 110/179 (61.45%), Query Frame = 3
Query:  186 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            +  WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++             +VPF++LGNKID P A SE ELR  LGL N TTG   +       RP+EVFMCS+V + GY
Sbjct:    6 IFGWFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAVSEAELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_ASHGO (Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN=SAR1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.325e-42
Identity = 93/179 (51.96%), Postives = 109/179 (60.89%), Query Frame = 3
Query:  186 LLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            L  WF  +L+SLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   ERF E++              VPF++LGNKID P A SE ELR  LGL N TTG   +       RP+E+FMCS+V K GY
Sbjct:    6 LFGWFRDILSSLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGSIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADSERFNEARVELDALFQIPELKTVPFVILGNKIDAPSAVSETELRAALGLLN-TTGDARIE----GQRPVELFMCSVVMKSGY 179          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_PHANO (Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodorum GN=SAR1 PE=3 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 9.674e-42
Identity = 93/174 (53.45%), Postives = 111/174 (63.79%), Query Frame = 3
Query:  201 YGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            + VL+SLGL  K AK+LFLGLDNAGKTTLLHMLK++R+   QPT +PTSEELSIG +KF  FDLGGH  ARR+W                   ER  ESK             N PF++LGNKID P A SE++LR  LGL   TTGKG+V L    +RP+EVFMCS+V + GY
Sbjct:    4 WDVLSSLGLMNKHAKLLFLGLDNAGKTTLLHMLKNDRVAVLQPTLHPTSEELSIGNVKFTTFDLGGHAQARRLWRDYFPEVSGIVFLVDAKDHERLNESKAELDALLAMEELKNTPFVILGNKIDHPEAVSEDQLRATLGLYQ-TTGKGKVPLE--GIRPIEVFMCSVVMRQGY 174          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_CANGA (Small COPII coat GTPase SAR1 OS=Candida glabrata GN=SAR1 PE=3 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 4.801e-41
Identity = 92/176 (52.27%), Postives = 108/176 (61.36%), Query Frame = 3
Query:  195 WFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            WF  VLASLGLW K  K+LFLGLDNAGKTTLLHMLK++RL   QPT +PTSEEL+IG IKF  FDLGGH  ARR+W                   +RF E++             +VPF++LGNKID   A SE ELR  LGL N TTG   +       RP+EVFMCS+V + GY
Sbjct:    8 WFRDVLASLGLWNKHGKLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFTTFDLGGHVQARRLWKDYFPEVNGIVFLVDSADPDRFDEARVELDALFNITELKDVPFVILGNKIDAANAVSEAELRSALGLLN-TTGSQRIE----GQRPVEVFMCSVVMRNGY 178          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_GIALA (GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR1 PE=3 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.145e-34
Identity = 76/177 (42.94%), Postives = 102/177 (57.63%), Query Frame = 3
Query:  192 DWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMGY 722
            DWF   L+ LGL++K+A I+F+GLDNAGK+TLL MLK+       PTQ PTS+EL +G I+FK FDLGGH++AR++W                    RF ES++              P L+L NK+DI  A S E +    G+ +  TGKG  NL   + RPLEVF CS++ + GY
Sbjct:    5 DWFKSALSFLGLYKKKATIVFVGLDNAGKSTLLAMLKNSATTTVAPTQQPTSQELVMGSIRFKTFDLGGHEVARQLWEQYVTNSDGIVFLVDSADPSRFEESRRTLQELLDNHDLATTPILILSNKVDIQTAVSMETMVQSFGIQHLLTGKGGSNLRS-DQRPLEVFPCSVINRFGY 180          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1B_DICDI (GTP-binding protein Sar1B OS=Dictyostelium discoideum GN=sarB PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.229e-20
Identity = 63/181 (34.81%), Postives = 84/181 (46.41%), Query Frame = 3
Query:  180 MFLLDWFYGVLASLGLWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVW-XXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDIPYAASEEELRYHLGLXNFTTGKGEVNLAELNVRPLEVFMCSIVRKMG 719
            MFL+DWFY +   LG ++KEAKI+ +GL NAGKTTLLH+L    L  H PT  P +E  + G + FKA+DLGG Q  R +W                        ESK               P L+LG+K D     + E L   L +  F     E+ L   N  P ++ M S + + G
Sbjct:    1 MFLVDWFYNMFLWLGFFKKEAKIVIIGLGNAGKTTLLHLLVTGSLKSHIPTLRPNAESFTYGNVNFKAYDLGGQQNLRFLWKQYVPDSKTIIVFMVDSSDYNSIIESKSEIHDILGDEHLSQSPLLILGSKCDAKGHHNRENLIDLLDIRRF-----ELGLNNSNNVPFDLIMTSSITRYG 176          
BLAST of FC876181 vs. ExPASy Swiss-Prot
Match: SAR1_ENCCU (Small COPII coat GTPase SAR1 OS=Encephalitozoon cuniculi GN=SAR1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.225e-13
Identity = 42/118 (35.59%), Postives = 59/118 (50.00%), Query Frame = 3
Query:  225 LWQKEAKILFLGLDNAGKTTLLHMLKDERLVQHQPTQYPTSEELSIGKIKFKAFDLGGHQIARRVWXXXXXXXXXXXXXXXXXXXERFAESKKXXXXXXXXXXXXNVPFLVLGNKIDI 578
            L+ K + ILFLG+DNAGKTTL++ LK +    + PT +P++  + IG +K +  DLGGH  AR  W                   ERF E ++              P +VL NKID+
Sbjct:   31 LFGKPSSILFLGIDNAGKTTLVNKLKSDSTDVYMPTHHPSTSYIEIGNLKAQVIDLGGHTAARLAWRDYFYDCHGIVFIVDVHDVERFQEVRE--AYETVLSLEKRAPVVVLMNKIDL 146          
The following BLAST results are available for this feature:
BLAST of FC876181 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49
Match NameE-valueIdentityDescription
SAR1A_MOUSE3.928e-4351.09GTP-binding protein SAR1a OS=Mus musculus GN=Sar1a... [more]
SAR1_KLULA1.493e-4253.07Small COPII coat GTPase SAR1 OS=Kluyveromyces lact... [more]
SAR1_YEAST2.546e-4252.51Small COPII coat GTPase SAR1 OS=Saccharomyces cere... [more]
SAR1_ASHGO3.325e-4251.96Small COPII coat GTPase SAR1 OS=Ashbya gossypii GN... [more]
SAR1_PHANO9.674e-4253.45Small COPII coat GTPase SAR1 OS=Phaeosphaeria nodo... [more]
SAR1_CANGA4.801e-4152.27Small COPII coat GTPase SAR1 OS=Candida glabrata G... [more]
SAR1_GIALA1.145e-3442.94GTP-binding protein Sar1 OS=Giardia lamblia GN=SAR... [more]
SAR1B_DICDI1.229e-2034.81GTP-binding protein Sar1B OS=Dictyostelium discoid... [more]
SAR1_ENCCU7.225e-1335.59Small COPII coat GTPase SAR1 OS=Encephalitozoon cu... [more]

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Properties
Property NameValue
Genbank descriptionC32001C09EF DevOvary1 Citrus clementina cDNA clone C32001C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876181 ID=FC876181; Name=FC876181; organism=Citrus clementina; type=EST; length=722bp
CTCGCCGGGGAAGCAGTCCCTGGTTGATTACGTTCGCCCACTGAACTTGC
TCATCTTAGGGTCAGTATCAAATCGAAACAGAGGCCTTGAATTGGACGAT
CTGATTCGTTCTCAGCCTTAGATCGTCGTAAATTCAAGCTCGATCCGTTT
TCGTTTCTAATTTGTCTACCGATAAAGCCATGTTTCTCCTCGACTGGTTC
TACGGCGTGCTGGCCTCCCTCGGTCTTTGGCAGAAAGAGGCCAAGATCTT
GTTTTTAGGGCTTGATAATGCTGGAAAAACAACGTTGCTTCACATGTTGA
AAGATGAGAGATTGGTTCAACATCAGCCAACACAGTATCCCACATCGGAA
GAGCTTAGTATTGGGAAAATTAAGTTCAAGGCGTTTGATTTGGGAGGCCA
TCAGATTGCTAGGAGAGTCTGGAAGGATTACTATGCGAAGGTTGATGCTG
TGGTATACCTAGTGGATGCCTATGACAAAGAGAGGTTTGCAGAATCAAAG
AAAGAACTGGATGCACTCCTTTCTGATGAGGCATTGGCCAATGTTCCTTT
TCTTGTGTTAGGAAACAAGATTGACATCCCTTATGCTGCTTCTGAGGAAG
AGTTGCGTTACCACCTTGGCCTATNCAATTTCACCACTGGGAAAGGGGAG
GTTAATCTAGCGGAACTCAATGTCCGTCCACTGGAGGTGTTTATGTGTAG
CATAGTTCGCAAAATGGGATAT
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