FC876182

Overview
NameFC876182
Unique NameFC876182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_EMENI (Cytosolic Fe-S cluster assembly factor nbp35 OS=Emericella nidulans GN=nbp35 PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.720e-21
Identity = 40/58 (68.97%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+S+ AG+ D C GCPNQ  CA+APKGPDPD+  I  R+A+V+HKILVLSGKG
Sbjct:   29 EHCPGPESDQAGQGDACAGCPNQSICASAPKGPDPDIPLITARLASVRHKILVLSGKG 86          

HSP 2 Score: 27.335 bits (59), Expect = 1.720e-21
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTFS+ L++  A+
Sbjct:   85 KGGVGKSTFSSLLAHGFAS 103          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_NEUCR (Cytosolic Fe-S cluster assembly factor NBP35 OS=Neurospora crassa GN=nbp-35 PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.238e-21
Identity = 40/58 (68.97%), Postives = 47/58 (81.03%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+S+ AG +D C GCPNQ  CATAPKGPDPD+  I  R++ VKHKIL+LSGKG
Sbjct:   30 EHCPGPESQQAGTADSCAGCPNQAICATAPKGPDPDIPLITARLSGVKHKILILSGKG 87          

HSP 2 Score: 27.335 bits (59), Expect = 2.238e-21
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTF++ L++A A
Sbjct:   86 KGGVGKSTFTSLLAHAFA 103          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_COCIM (Cytosolic Fe-S cluster assembly factor NBP35 OS=Coccidioides immitis GN=NBP35 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 6.409e-21
Identity = 39/58 (67.24%), Postives = 48/58 (82.76%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+SE AG+ D C GCPNQ  CA+APKGPDPD+  I  R+++++HKILVLSGKG
Sbjct:   28 EHCPGPESEQAGKGDACAGCPNQSICASAPKGPDPDIPIITARLSSIRHKILVLSGKG 85          

HSP 2 Score: 26.1794 bits (56), Expect = 6.409e-21
Identity = 11/19 (57.89%), Postives = 16/19 (84.21%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTF++ L+ A A+
Sbjct:   84 KGGVGKSTFTSLLANAFAS 102          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DANRE (Cytosolic Fe-S cluster assembly factor nubp1 OS=Danio rerio GN=nubp1 PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.838e-20
Identity = 39/66 (59.09%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++P +A EHCPG  S+ AG+S  CQGCPNQ  CA+ A K PDP +  I ++M +VKHKILVLSGKG
Sbjct:    3 DVPNDAPEHCPGTSSDQAGKSSACQGCPNQSICASGATKAPDPAIEEIKQKMTSVKHKILVLSGKG 68          

HSP 2 Score: 33.4982 bits (75), Expect = 1.838e-20
Identity = 15/19 (78.95%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTFSA LS+ALA+
Sbjct:   67 KGGVGKSTFSAHLSHALAS 85          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_ASPCL (Cytosolic Fe-S cluster assembly factor nbp35 OS=Aspergillus clavatus GN=nbp35 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.386e-20
Identity = 39/59 (66.10%), Postives = 48/59 (81.36%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATA-PKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+SE AG+ D C GCPNQ  CA++ PKGPDPD+  I ER++ ++HKILVLSGKG
Sbjct:   28 EHCPGPESEQAGKGDACAGCPNQAICASSTPKGPDPDIPIITERLSQIRHKILVLSGKG 86          

HSP 2 Score: 28.8758 bits (63), Expect = 2.386e-20
Identity = 12/19 (63.16%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTFS+ L++A A+
Sbjct:   85 KGGVGKSTFSSLLAHAFAS 103          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_NEMVE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Nematostella vectensis GN=v1g236650 PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.391e-20
Identity = 39/66 (59.09%), Postives = 53/66 (80.30%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATA-PKGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++P++A EHCPG +S+ +G+   CQGCPNQ+ CA++ P  PDPDL  I ER+++VKHKILVLSGKG
Sbjct:    3 DVPKDAPEHCPGTESDKSGKVSACQGCPNQQICASSKPAPPDPDLGKIKERLSSVKHKILVLSGKG 68          

HSP 2 Score: 30.8018 bits (68), Expect = 2.391e-20
Identity = 13/19 (68.42%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTF+A L++ LAA
Sbjct:   67 KGGVGKSTFTAHLAHGLAA 85          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_CANGA (Cytosolic Fe-S cluster assembly factor NBP35 OS=Candida glabrata GN=NBP35 PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 3.106e-20
Identity = 36/58 (62.07%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+SE AG++D CQ C N++ C + PKGPDPD+  I E ++ +KHKILVLSGKG
Sbjct:   31 EHCPGPESEMAGKADACQTCENKDICESLPKGPDPDIPLITENLSGIKHKILVLSGKG 88          

HSP 2 Score: 31.9574 bits (71), Expect = 3.106e-20
Identity = 14/21 (66.67%), Postives = 18/21 (85.71%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAAMD 729
            +GGVGKSTF+  LS+AL+A D
Sbjct:   87 KGGVGKSTFTTMLSWALSADD 107          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_YEAST (Cytosolic Fe-S cluster assembly factor NBP35 OS=Saccharomyces cerevisiae GN=NBP35 PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 3.108e-20
Identity = 36/65 (55.38%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E+ +   EHCPGP+S+ AG+SD C GC N+E C + PKGPDPD+  I + ++ ++HKILVLSGKG
Sbjct:   18 ELNQPEPEHCPGPESDMAGKSDACGGCANKEICESLPKGPDPDIPLITDNLSGIEHKILVLSGKG 82          

HSP 2 Score: 32.3426 bits (72), Expect = 3.108e-20
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTF+A LS+AL+A
Sbjct:   81 KGGVGKSTFAAMLSWALSA 99          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUP1A_XENLA (Cytosolic Fe-S cluster assembly factor nubp1-A OS=Xenopus laevis GN=nubp1-A PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.262e-20
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            +IP+NA +HCPG  S  AG+S  CQGCPNQ  CA+ A  GPDP +  I E+M+ VKHKILVLSGKG
Sbjct:    3 DIPDNAPQHCPGTDSTEAGKSSACQGCPNQSICASGAAAGPDPAIEEIKEKMSLVKHKILVLSGKG 68          

HSP 2 Score: 30.4166 bits (67), Expect = 5.262e-20
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   67 KGGVGKSTFSAHLAHGLA 84          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_AEDAE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Aedes aegypti GN=AAEL010360 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.842e-20
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 3
Query:  459 PPMENGEIPENANEHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            P +EN   P +A EHCPG +SE+AG++  C GCPNQ+ CAT PKGPDP +  + E++  V++KILVLSGKG
Sbjct:    4 PEVENK--PADAPEHCPGTESENAGKASACAGCPNQQICATGPKGPDPSIALVKEKLKEVRNKILVLSGKG 72          

HSP 2 Score: 26.9498 bits (58), Expect = 6.842e-20
Identity = 12/21 (57.14%), Postives = 17/21 (80.95%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAAMD 729
            +GGVGKST +A LS A+A ++
Sbjct:   71 KGGVGKSTVTALLSRAMAQLN 91          
The following BLAST results are available for this feature:
BLAST of FC876182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NBP35_EMENI1.720e-2168.97Cytosolic Fe-S cluster assembly factor nbp35 OS=Em... [more]
NBP35_NEUCR2.238e-2168.97Cytosolic Fe-S cluster assembly factor NBP35 OS=Ne... [more]
NBP35_COCIM6.409e-2167.24Cytosolic Fe-S cluster assembly factor NBP35 OS=Co... [more]
NUBP1_DANRE1.838e-2059.09Cytosolic Fe-S cluster assembly factor nubp1 OS=Da... [more]
NBP35_ASPCL2.386e-2066.10Cytosolic Fe-S cluster assembly factor nbp35 OS=As... [more]
NUBP1_NEMVE2.391e-2059.09Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NBP35_CANGA3.106e-2062.07Cytosolic Fe-S cluster assembly factor NBP35 OS=Ca... [more]
NBP35_YEAST3.108e-2055.38Cytosolic Fe-S cluster assembly factor NBP35 OS=Sa... [more]
NUP1A_XENLA5.262e-2062.12Cytosolic Fe-S cluster assembly factor nubp1-A OS=... [more]
NUBP1_AEDAE6.842e-2056.34Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC32001C10EF DevOvary1 Citrus clementina cDNA clone C32001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876182 ID=FC876182; Name=FC876182; organism=Citrus clementina; type=EST; length=731bp
GAAAACAAACCAAATTGGCAAATTCCCAAAACCTAAAAATCCCTAAATTT
ATCTCCGCTTCCCCAGCTGCTCCATCAGCTTCTCACTTCACTCTCCTCCG
GCAGCCAACAGCCGACGTTTATTGCCCCACCCTAACACCGAATTAAGGAG
CCACCACCTTCAGCAGCGATCCACCGTTCACGCGCGACGCAGCAGAGCCA
GCAACCCAGCAGTAGTGCAGCACCAAACGGGCGACGCAACAGTGACCCAC
ACCCACCAGCACCACCGTGCGACGTAGCTGCAGCCAATCGAACACGCGCG
ACGCAGCAGCAGCTATCTCAGCTCCAACGCGACCTGAACCCAGCAGCACC
AGCAGCGCACGCGAACCAACAGCAAACCATCACCAACTCCATCCCAACTC
TCCTCCTTTGCTTTCATTCACATACTAAGAAGCAGAAGAACTACTATTAT
AAGAGAAGCCACCAATGGAGAATGGAGAAATTCCAGAAAATGCTAATGAA
CATTGCCCTGGTCCTCAATCAGAGTCTGCAGGAGAATCTGATGATTGCCA
AGGATGCCCTAATCAAGAAGCTTGTGCTACCGCCCCAAAAGGCCCTGACC
CTGACTTGGTTGCTATTGCTGAACGAATGGCTACTGTTAAGCATAAGATA
CTGGTTTTATCGGGTAAGGGGTGGAGTTGGAAAAAGCACATTCTCTGCCC
AGCTCTCATATGCACTAGCGGCTATGGATTT
back to top