FC876182

Overview
NameFC876182
Unique NameFC876182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_DEBHA (Cytosolic Fe-S cluster assembly factor NBP35 OS=Debaryomyces hansenii GN=NBP35 PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 8.891e-20
Identity = 37/59 (62.71%), Postives = 46/59 (77.97%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPGP+SE AG+ D C GCPNQ  C++  P+GPDPDL  I +R++ + HKILVLSGKG
Sbjct:   18 EHCPGPESEQAGKEDACNGCPNQSICSSQLPQGPDPDLPLINKRLSQIDHKILVLSGKG 76          

HSP 2 Score: 32.3426 bits (72), Expect = 8.891e-20
Identity = 14/19 (73.68%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTF++ LS+ALAA
Sbjct:   75 KGGVGKSTFTSMLSWALAA 93          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_ASHGO (Cytosolic Fe-S cluster assembly factor NBP35 OS=Ashbya gossypii GN=NBP35 PE=3 SV=2)

HSP 1 Score: 85.1149 bits (209), Expect = 1.504e-19
Identity = 34/58 (58.62%), Postives = 45/58 (77.59%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E CPGP +E+AG+ D CQGC N++ C + PKGPDPD+  I + +A V+HK+LVLSGKG
Sbjct:   30 EQCPGPAAENAGKGDACQGCANKDICESLPKGPDPDVALITQNLAPVRHKVLVLSGKG 87          

HSP 2 Score: 31.9574 bits (71), Expect = 1.504e-19
Identity = 14/19 (73.68%), Postives = 17/19 (89.47%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTFSA L +AL+A
Sbjct:   86 KGGVGKSTFSAMLGWALSA 104          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_CANAL (Cytosolic Fe-S cluster assembly factor NBP35 OS=Candida albicans GN=NBP35 PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 1.504e-19
Identity = 39/70 (55.71%), Postives = 50/70 (71.43%), Query Frame = 3
Query:  465 MENGEIPENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            +E  ++     EHCPGP+SE AG+ D C+GC NQE C++   KGPDPDL  I ER++ + HKILVLSGKG
Sbjct:    8 IEKSQLAAPEPEHCPGPESELAGQGDACKGCANQEICSSQTVKGPDPDLPIITERLSAIDHKILVLSGKG 77          

HSP 2 Score: 30.4166 bits (67), Expect = 1.504e-19
Identity = 12/19 (63.16%), Postives = 18/19 (94.74%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAA 723
            +GGVGKSTF++ L++A+AA
Sbjct:   76 KGGVGKSTFTSMLAWAIAA 94          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUP1B_XENLA (Cytosolic Fe-S cluster assembly factor nubp1-B OS=Xenopus laevis GN=nubp1-B PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.506e-19
Identity = 41/66 (62.12%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            +IPENA +HCPG  S  AG+S  CQGCPNQ  CA+ A   PDP +  I E+M+ VKHKILVLSGKG
Sbjct:    3 DIPENAPQHCPGTGSTEAGKSSACQGCPNQSICASAATSAPDPAIEEIKEKMSLVKHKILVLSGKG 68          

HSP 2 Score: 30.4166 bits (67), Expect = 1.506e-19
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   67 KGGVGKSTFSAHLAHGLA 84          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_CULQU (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Culex quinquefasciatus GN=CPIJ014142 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 3.308e-19
Identity = 37/63 (58.73%), Postives = 48/63 (76.19%), Query Frame = 3
Query:  483 PENANEHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            P +A EHCPG  SESAG++  C GCPNQ+ CAT PKGPDP +  + E++  V++K+LVLSGKG
Sbjct:   12 PADAPEHCPGTASESAGKASACAGCPNQQICATGPKGPDPSIALVKEKLREVRNKVLVLSGKG 74          

HSP 2 Score: 26.1794 bits (56), Expect = 3.308e-19
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST +A LS A+A
Sbjct:   73 KGGVGKSTVTALLSRAMA 90          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NBP35_GIBZE (Cytosolic Fe-S cluster assembly factor NBP35 OS=Gibberella zeae GN=NBP35 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.299e-19
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = 3
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++C GP S+ AG++D C GCPNQ  CA+APKGPDPD+  I+ R+  VKHKILVLSGKG
Sbjct:   31 QNCVGPDSQQAGKADSCAGCPNQAICASAPKGPDPDIPVISARLENVKHKILVLSGKG 88          

HSP 2 Score: 27.335 bits (59), Expect = 4.299e-19
Identity = 11/18 (61.11%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTF++ L++A A
Sbjct:   87 KGGVGKSTFTSLLAHAFA 104          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_ANOGA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Anopheles gambiae GN=AGAP011997 PE=3 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 5.598e-19
Identity = 35/65 (53.85%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAPKGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++P +A  HCPG QS+ AG++  C GCPNQ+ CAT PKGPDP +  + +++A V++K+LVLSGKG
Sbjct:    6 DVPSDAPAHCPGTQSDDAGKASACAGCPNQQLCATGPKGPDPAIALVRQKLADVRNKLLVLSGKG 70          

HSP 2 Score: 26.1794 bits (56), Expect = 5.598e-19
Identity = 12/18 (66.67%), Postives = 15/18 (83.33%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST +A LS A+A
Sbjct:   69 KGGVGKSTVTALLSRAMA 86          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_XENTR (Cytosolic Fe-S cluster assembly factor nubp1 OS=Xenopus tropicalis GN=nubp1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.231e-18
Identity = 38/66 (57.58%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAP-KGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++P NA +HCPG  S  AG+S  CQGCPNQ  CA+    GPDP +  I E++++VKHKILVLSGKG
Sbjct:    3 DVPINAPQHCPGTGSTEAGKSSACQGCPNQSICASGTMSGPDPAIEEIKEKLSSVKHKILVLSGKG 68          

HSP 2 Score: 30.4166 bits (67), Expect = 1.231e-18
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   67 KGGVGKSTFSAHLAHGLA 84          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_BRUMA (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Brugia malayi GN=Bm1_36105 PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 4.864e-17
Identity = 36/66 (54.55%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  477 EIPENANEHCPGPQSESAGESDDCQGCPNQEACATAP-KGPDPDLVAIAERMATVKHKILVLSGKG 671
            ++PENANE CPG  S  AG++  C GCPNQ  CA+   + PD DL+A+ +R+  V+HKIL+LSGKG
Sbjct:    3 DVPENANEDCPGATSADAGKAFSCTGCPNQTLCASGEIRRPDSDLLAVTDRLKNVRHKILILSGKG 68          

HSP 2 Score: 26.1794 bits (56), Expect = 4.864e-17
Identity = 12/21 (57.14%), Postives = 15/21 (71.43%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALAAMD 729
            +GGVGKS  +A L+ ALA  D
Sbjct:   67 KGGVGKSAVAANLARALAVND 87          
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_RAT (Cytosolic Fe-S cluster assembly factor NUBP1 OS=Rattus norvegicus GN=Nubp1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.224e-15
Identity = 35/63 (55.56%), Postives = 41/63 (65.08%), Query Frame = 3
Query:  486 ENANEHCPGPQSESAGESDDCQGCPNQEACAT-APKGPDPDLVAIAERMATVKHKILVLSGKG 671
            E A   CPG  S  AG    CQGCPNQ+ CA+ A   PDP +  I E+M TV+H+ILVLSGKG
Sbjct:    2 EGAPHGCPGADSAQAGRGASCQGCPNQKLCASGAGAAPDPAVEEIREKMKTVRHRILVLSGKG 64          

HSP 2 Score: 30.4166 bits (67), Expect = 3.224e-15
Identity = 13/18 (72.22%), Postives = 16/18 (88.89%), Query Frame = 1
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKSTFSA L++ LA
Sbjct:   63 KGGVGKSTFSAHLAHGLA 80          
The following BLAST results are available for this feature:
BLAST of FC876182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NBP35_DEBHA8.891e-2062.71Cytosolic Fe-S cluster assembly factor NBP35 OS=De... [more]
NBP35_ASHGO1.504e-1958.62Cytosolic Fe-S cluster assembly factor NBP35 OS=As... [more]
NBP35_CANAL1.504e-1955.71Cytosolic Fe-S cluster assembly factor NBP35 OS=Ca... [more]
NUP1B_XENLA1.506e-1962.12Cytosolic Fe-S cluster assembly factor nubp1-B OS=... [more]
NUBP1_CULQU3.308e-1958.73Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NBP35_GIBZE4.299e-1963.79Cytosolic Fe-S cluster assembly factor NBP35 OS=Gi... [more]
NUBP1_ANOGA5.598e-1953.85Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_XENTR1.231e-1857.58Cytosolic Fe-S cluster assembly factor nubp1 OS=Xe... [more]
NUBP1_BRUMA4.864e-1754.55Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_RAT3.224e-1555.56Cytosolic Fe-S cluster assembly factor NUBP1 OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionC32001C10EF DevOvary1 Citrus clementina cDNA clone C32001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876182 ID=FC876182; Name=FC876182; organism=Citrus clementina; type=EST; length=731bp
GAAAACAAACCAAATTGGCAAATTCCCAAAACCTAAAAATCCCTAAATTT
ATCTCCGCTTCCCCAGCTGCTCCATCAGCTTCTCACTTCACTCTCCTCCG
GCAGCCAACAGCCGACGTTTATTGCCCCACCCTAACACCGAATTAAGGAG
CCACCACCTTCAGCAGCGATCCACCGTTCACGCGCGACGCAGCAGAGCCA
GCAACCCAGCAGTAGTGCAGCACCAAACGGGCGACGCAACAGTGACCCAC
ACCCACCAGCACCACCGTGCGACGTAGCTGCAGCCAATCGAACACGCGCG
ACGCAGCAGCAGCTATCTCAGCTCCAACGCGACCTGAACCCAGCAGCACC
AGCAGCGCACGCGAACCAACAGCAAACCATCACCAACTCCATCCCAACTC
TCCTCCTTTGCTTTCATTCACATACTAAGAAGCAGAAGAACTACTATTAT
AAGAGAAGCCACCAATGGAGAATGGAGAAATTCCAGAAAATGCTAATGAA
CATTGCCCTGGTCCTCAATCAGAGTCTGCAGGAGAATCTGATGATTGCCA
AGGATGCCCTAATCAAGAAGCTTGTGCTACCGCCCCAAAAGGCCCTGACC
CTGACTTGGTTGCTATTGCTGAACGAATGGCTACTGTTAAGCATAAGATA
CTGGTTTTATCGGGTAAGGGGTGGAGTTGGAAAAAGCACATTCTCTGCCC
AGCTCTCATATGCACTAGCGGCTATGGATTT
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