FC876182

Overview
NameFC876182
Unique NameFC876182
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length731
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROPS (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA14715 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.665e-11
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATA-PKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG+   C GCPNQ  C+    K  DP    +A  +  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESEQAGQVSACAGCPNQSICSDPNKKREDPGKALVAAALKDVKHKLLILSGKG 65

HSP 2 Score: 21.9422 bits (45), Expect = 6.665e-11
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1 
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST +  L+  LA
Sbjct:   64 KGGVGKSTVTTLLTRYLA 81
[Close]
BLAST of FC876182 vs. ExPASy Swiss-Prot
Match: NUBP1_DROPE (Cytosolic Fe-S cluster assembly factor NUBP1 homolog OS=Drosophila persimilis GN=GL18780 PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 6.665e-11
Identity = 30/59 (50.85%), Postives = 37/59 (62.71%), Query Frame = 3 
Query:  498 EHCPGPQSESAGESDDCQGCPNQEACATA-PKGPDPDLVAIAERMATVKHKILVLSGKG 671
            EHCPG +SE AG+   C GCPNQ  C+    K  DP    +A  +  VKHK+L+LSGKG
Sbjct:    7 EHCPGVESEQAGQVSACAGCPNQSICSDPNKKREDPGKALVAAALKDVKHKLLILSGKG 65

HSP 2 Score: 21.9422 bits (45), Expect = 6.665e-11
Identity = 10/18 (55.56%), Postives = 13/18 (72.22%), Query Frame = 1 
Query:  667 RGGVGKSTFSAQLSYALA 720
            +GGVGKST +  L+  LA
Sbjct:   64 KGGVGKSTVTTLLTRYLA 81
The following BLAST results are available for this feature:
BLAST of FC876182 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 42
Match NameE-valueIdentityDescription
NUBP1_DROPS6.665e-1150.85Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]
NUBP1_DROPE6.665e-1150.85Cytosolic Fe-S cluster assembly factor NUBP1 homol... [more]

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Properties
Property NameValue
Genbank descriptionC32001C10EF DevOvary1 Citrus clementina cDNA clone C32001C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876182 ID=FC876182; Name=FC876182; organism=Citrus clementina; type=EST; length=731bp
GAAAACAAACCAAATTGGCAAATTCCCAAAACCTAAAAATCCCTAAATTT
ATCTCCGCTTCCCCAGCTGCTCCATCAGCTTCTCACTTCACTCTCCTCCG
GCAGCCAACAGCCGACGTTTATTGCCCCACCCTAACACCGAATTAAGGAG
CCACCACCTTCAGCAGCGATCCACCGTTCACGCGCGACGCAGCAGAGCCA
GCAACCCAGCAGTAGTGCAGCACCAAACGGGCGACGCAACAGTGACCCAC
ACCCACCAGCACCACCGTGCGACGTAGCTGCAGCCAATCGAACACGCGCG
ACGCAGCAGCAGCTATCTCAGCTCCAACGCGACCTGAACCCAGCAGCACC
AGCAGCGCACGCGAACCAACAGCAAACCATCACCAACTCCATCCCAACTC
TCCTCCTTTGCTTTCATTCACATACTAAGAAGCAGAAGAACTACTATTAT
AAGAGAAGCCACCAATGGAGAATGGAGAAATTCCAGAAAATGCTAATGAA
CATTGCCCTGGTCCTCAATCAGAGTCTGCAGGAGAATCTGATGATTGCCA
AGGATGCCCTAATCAAGAAGCTTGTGCTACCGCCCCAAAAGGCCCTGACC
CTGACTTGGTTGCTATTGCTGAACGAATGGCTACTGTTAAGCATAAGATA
CTGGTTTTATCGGGTAAGGGGTGGAGTTGGAAAAAGCACATTCTCTGCCC
AGCTCTCATATGCACTAGCGGCTATGGATTT
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