FC876214

Overview
NameFC876214
Unique NameFC876214
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_METSB (60 kDa chaperonin OS=Methylocella silvestris (strain BL2 / DSM 15510 / NCIMB 13906) GN=groL PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 117/216 (54.17%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ F   AR  ML+G+  +  AVKVT+GPKGRNV+IEKS G P++TKDGVTVA  IE  DK +++GA L+++VA   N AAGDGTT AT+L  +I+ EG K+VAAGLN MDL+ GI +A+ AV++DLK+ ++ +++ EEI QV TISANG++ +GE+++ AM+KVG EGVITV +  ++  EL+ V GM+  RGY+SPYF+T+ +    ELE+P
Sbjct:    3 AKDVRFSSDARDRMLRGIDILNNAVKVTLGPKGRNVVIEKSFGAPRITKDGVTVAKEIELSDKFENLGAQLIREVASKQNDAAGDGTTTATILAASIVREGTKAVAAGLNPMDLKRGIDIAVAAVVADLKANSKKVTSNEEIAQVGTISANGDKSVGEMISTAMQKVGNEGVITVEEAKSLETELDVVEGMQFDRGYLSPYFITNAEKMIAELEDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BUCTS (60 kDa chaperonin OS=Buchnera aphidicola subsp. Thelaxes suberi GN=groL PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 121/216 (56.02%), Postives = 159/216 (73.61%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AKD+ FG  AR  ML+GV+ +A+AVKVT+GPKGRNV+++KS G P +TKDGVTVA  IE  DK +++GA +VK+VA   N AAGDGTT ATVL Q+I+TEG K+VAAG+N MDL+ G+  A+ A + +LK  +   S  + I QV TISAN +  +G+L+A AMEKVGKEGVITV +G  + +EL+ V GM+  RGY+SPYF+  P T   EL+NP
Sbjct:    3 AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPAITKDGVTVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQSIVTEGLKAVAAGMNPMDLKRGVDKAVIAAVEELKCLSVPCSDFKAIAQVGTISANSDETVGKLIAEAMEKVGKEGVITVEEGTGLQDELDVVEGMQFDRGYLSPYFINKPDTGSIELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BARBK (60 kDa chaperonin OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=groL PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR  +L+GV  +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  +K +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG K+VAA +N MDL+ GI  A++AV++DL  +A+ I T EEI QVATISANG  +IG+++A AMEKVG EGVITV +  T   ELE V GM+  RGY+SPYFVT+ +    +L++P
Sbjct:    3 AKEVKFGRDARERLLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELENKFENMGAQMLREVASKTNDIAGDGTTTATVLGQAIVQEGVKAVAASMNPMDLKRGIDAAVEAVVADLFKKAKKIQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_BARBA (60 kDa chaperonin OS=Bartonella bacilliformis GN=groL PE=1 SV=2)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 121/216 (56.02%), Postives = 163/216 (75.46%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR  +L+GV  +A+AVKVT+GPKGRNV+I+KS G P++TKDGV+VA  IE  +K +++GA ++++VA  TN  AGDGTT ATVL QAI+ EG K+VAA +N MDL+ GI  A++AV++DL  +A+ I T EEI QVATISANG  +IG+++A AMEKVG EGVITV +  T   ELE V GM+  RGY+SPYFVT+ +    +L++P
Sbjct:    3 AKEVKFGRDARERLLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELENKFENMGAQMLREVASKTNDIAGDGTTTATVLGQAIVQEGVKAVAASMNPMDLKRGIDAAVEAVVADLFKKAKKIQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_ALTMD (60 kDa chaperonin OS=Alteromonas macleodii (strain DSM 17117 / Deep ecotype) GN=groL PE=3 SV=1)

HSP 1 Score: 240.736 bits (613), Expect = 5.875e-63
Identity = 119/216 (55.09%), Postives = 161/216 (74.54%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  AR+ ML+GV+ +A AVKVT+GPKGRNV+++KS G P +TKDGV+VA  IE  DK +++GA +VK+VA   N  AGDGTT ATVL QAI+TEG KSVAAG+N MDL+ GI  A+ A + +LK+ +   +  + I QV TISAN + E+G+++A+AMEKVGKEGVITV +G  + NEL+ V GM+  RGY+SPYF+ + +    EL+NP
Sbjct:    3 AKEVRFGDDARSKMLKGVNTLANAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELEDKFENMGAQMVKEVASKANDEAGDGTTTATVLAQAIVTEGLKSVAAGMNPMDLKRGIDKAVIAAVEELKALSTDCADSKSIAQVGTISANSDAEVGDIIAQAMEKVGKEGVITVEEGQALQNELDVVEGMQFDRGYLSPYFINNQENGTVELDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_VEREI (60 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groL PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 122/216 (56.48%), Postives = 164/216 (75.93%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENP 722
            AK++ FG  ARA M++GV+ +A AVKVT+GPKGRNV+IE+S G P VTKDGV+VA  IE +DK +++GA LVK+VA  T+  AGDGTT ATVL QAI+ EG K VAAG+N MDL+ GI  A+ A++++LK  ++  +T +EI QV +ISAN +  IG+L+A AM+KVGKEGVITV DG ++ +EL+ V GM+  RGY+SPYF+ +P  Q   L+NP
Sbjct:    3 AKEVVFGGEARARMVEGVNILANAVKVTLGPKGRNVVIERSFGAPTVTKDGVSVAKEIELKDKLQNMGAQLVKEVASKTSDNAGDGTTTATVLAQAIVREGFKYVAAGINPMDLKRGIDKAVTALVAELKKASKPTTTSKEIAQVGSISANADETIGKLIADAMDKVGKEGVITVEDGKSLESELDVVEGMQFDRGYLSPYFINNPDKQAALLDNP 218          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEAE (60 kDa chaperonin OS=Pseudomonas aeruginosa GN=groL PE=1 SV=3)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 122/217 (56.22%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNV+++KS G P +TKDGV+VA  IE +DK +++GA LVK VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  A+++ LK  A+  +  + I QV TISAN +  IG+++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYFV  P T   EL++PL
Sbjct:    3 AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEAB (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=groL PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 122/217 (56.22%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNV+++KS G P +TKDGV+VA  IE +DK +++GA LVK VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  A+++ LK  A+  +  + I QV TISAN +  IG+++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYFV  P T   EL++PL
Sbjct:    3 AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEA8 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain LESB58) GN=groL PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 122/217 (56.22%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNV+++KS G P +TKDGV+VA  IE +DK +++GA LVK VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  A+++ LK  A+  +  + I QV TISAN +  IG+++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYFV  P T   EL++PL
Sbjct:    3 AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPL 219          
BLAST of FC876214 vs. ExPASy Swiss-Prot
Match: CH60_PSEA7 (60 kDa chaperonin OS=Pseudomonas aeruginosa (strain PA7) GN=groL PE=3 SV=1)

HSP 1 Score: 240.35 bits (612), Expect = 7.673e-63
Identity = 122/217 (56.22%), Postives = 158/217 (72.81%), Query Frame = 3
Query:   75 AKDINFGVGARAAMLQGVSEVAEAVKVTMGPKGRNVIIEKSVGNPKVTKDGVTVASSIEFRDKAKDVGANLVKQVAGATNKAAGDGTTCATVLTQAILTEGCKSVAAGLNVMDLRSGIKMAIDAVISDLKSRAQMISTPEEITQVATISANGEREIGELLARAMEKVGKEGVITVVDGNTMVNELESVGGMKLARGYISPYFVTDPKTQKCELENPL 725
            AK++ FG  AR  ML GV+ +A+AVK T+GPKGRNV+++KS G P +TKDGV+VA  IE +DK +++GA LVK VA   N AAGDGTT ATVL QAI+ EG K+VAAG+N MDL+ GI  A  A+++ LK  A+  +  + I QV TISAN +  IG+++A AMEKVGKEGVITV +G+ + NEL  V GM+  RGY+SPYFV  P T   EL++PL
Sbjct:    3 AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASKANDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPL 219          
The following BLAST results are available for this feature:
BLAST of FC876214 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
CH60_METSB5.875e-6354.1760 kDa chaperonin OS=Methylocella silvestris (stra... [more]
CH60_BUCTS5.875e-6356.0260 kDa chaperonin OS=Buchnera aphidicola subsp. Th... [more]
CH60_BARBK5.875e-6356.0260 kDa chaperonin OS=Bartonella bacilliformis (str... [more]
CH60_BARBA5.875e-6356.0260 kDa chaperonin OS=Bartonella bacilliformis GN=g... [more]
CH60_ALTMD5.875e-6355.0960 kDa chaperonin OS=Alteromonas macleodii (strain... [more]
CH60_VEREI7.673e-6356.4860 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH60_PSEAE7.673e-6356.2260 kDa chaperonin OS=Pseudomonas aeruginosa GN=gro... [more]
CH60_PSEAB7.673e-6356.2260 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA87.673e-6356.2260 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]
CH60_PSEA77.673e-6356.2260 kDa chaperonin OS=Pseudomonas aeruginosa (strai... [more]

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Properties
Property NameValue
Genbank descriptionC32001G09EF DevOvary1 Citrus clementina cDNA clone C32001G09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876214 ID=FC876214; Name=FC876214; organism=Citrus clementina; type=EST; length=725bp
GAGCCTCTTCAATCAGTTCCCCTCGCTGCAAGAAAGGGGTGTATGGTAGG
GTTTTATGCAATAGGAACTATGTGGCGAAGGATATCAATTTTGGAGTTGG
TGCACGAGCTGCCATGTTACAAGGTGTATCCGAGGTGGCAGAAGCTGTAA
AAGTTACCATGGGACCAAAGGGTCGCAATGTGATTATTGAGAAAAGTGTT
GGAAATCCCAAGGTCACAAAGGATGGTGTTACTGTTGCCAGCAGCATAGA
ATTCAGGGACAAGGCAAAAGATGTTGGTGCAAACCTTGTAAAGCAGGTTG
CCGGTGCTACTAATAAAGCTGCGGGAGATGGTACAACTTGCGCAACTGTT
CTGACTCAGGCCATTCTCACAGAAGGCTGTAAATCTGTAGCTGCTGGTCT
AAATGTGATGGATTTGCGCAGTGGTATTAAGATGGCGATCGATGCAGTCA
TATCTGATTTAAAAAGCAGAGCACAAATGATTAGTACACCGGAAGAAATT
ACACAGGTGGCGACTATCTCTGCAAATGGTGAACGGGAGATTGGGGAACT
GCTAGCAAGAGCAATGGAGAAAGTTGGAAAGGAAGGAGTCATTACTGTTG
TTGATGGAAATACTATGGTTAATGAGCTGGAAAGTGTTGGAGGAATGAAG
CTAGCCAGAGGTTACATTTCTCCTTATTTTGTTACAGATCCAAAGACACA
GAAATGTGAACTTGAAAATCCTCTG
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