FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 3.618e-26
Identity = 66/148 (44.59%), Postives = 86/148 (58.11%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRD-DVELVAVNDPFITTDYMTYMCKYDSVHGQW------KHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEYKPE 506
            ++GINGFGRIGRLV RV+L R     +V +NDPFITTD M Y+ KYD+VHG++      K  +L++    TL      + V   +NP EIPW  +  E V+ES+G FT               V+I+APS DAPMFV GVN    K +
Sbjct:    4 RVGINGFGRIGRLVLRVLLSRGMPANVVLINDPFITTDAMAYIFKYDTVHGRFPGTVVGKEGKLEI----TLNGHVYDIAVSACKNPAEIPWGASNVEVVIESSGAFTTMEKAHLHQQGGAKKVLITAPSADAPMFVYGVNHQSLKAD 147          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 3.063e-25
Identity = 63/145 (43.45%), Postives = 84/145 (57.93%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKPE 506
            +KIGINGFGRIGRLVAR+ +    V LV +ND  +    + Y+ KYDS HG +      V  ++ ++  ++ +  F  RNP ++PW + GA+YVVESTG+FT               VIISAPSKD    P FVVGVN   Y  +
Sbjct:    2 LKIGINGFGRIGRLVARIAMANPQVTLVGIND-LVPASNLAYLFKYDSTHGSYGG--TVVAKEEGIVIDDQFIPCFSQRNPAQLPWGDLGADYVVESTGLFTTYATAENHLKAGAKRVIISAPSKDPEKIPTFVVGVNHLNYNAD 143          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ANAVT (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937) GN=gap1 PE=3 SV=4)

HSP 1 Score: 114.005 bits (284), Expect = 4.000e-25
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   72 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 503
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGKLRS-QVEAKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGAKRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anabaena sp. (strain PCC 7120) GN=gap1 PE=1 SV=3)

HSP 1 Score: 114.005 bits (284), Expect = 4.000e-25
Identity = 63/147 (42.86%), Postives = 87/147 (59.18%), Query Frame = 3
Query:   72 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD---APMFVVGVNEHEYKP 503
            M K+K+GINGFGRIGRLV R  +   ++E V +ND  +  D + Y+ KYDS HG+ +  +++ KDD  ++ G   +    VRNP E+PW + GA+YVVESTG+FT               VIISAP+KD       +VGVN   + P
Sbjct:    1 MAKLKVGINGFGRIGRLVLRAGINNPNIEFVGIND-LVPPDNLAYLLKYDSTHGRLRS-QVETKDDGIVIDGHF-IPCVSVRNPAELPWGKLGADYVVESTGLFTDSEGASKHLQAGARRVIISAPTKDPDRVRTLLVGVNHDLFDP 144          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_BUCAI (Glyceraldehyde-3-phosphate dehydrogenase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=gapA PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.824e-25
Identity = 56/143 (39.16%), Postives = 88/143 (61.54%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 506
            +K+GINGFGRIGR++ R+  +R D+E++A+ND  +  +Y+ YM KYDS HG +K H    KD+  ++   K + V  +++PE++ W +   + V+ESTG+F                V+++ PSK D PMFV G N H+Y+ E
Sbjct:    3 IKVGINGFGRIGRVLFRLAQKRSDIEIIAIND-LLAPEYIAYMLKYDSTHGVFKKHITFDKDN--IIINGKNIRVTSIKDPEKLMWHDLSIDVVIESTGLFLKREQAYKHILAGSKKVVVTGPSKDDIPMFVRGANFHKYQGE 142          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_GUITH (Glyceraldehyde-3-phosphate dehydrogenase, chloroplastic OS=Guillardia theta GN=GAPC1 PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 6.824e-25
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = 3
Query:   72 MGKVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEYK 500
            M  V  GINGFGRIGRLVAR++++  + +L+ VN    T DYM Y  KYDS+HG+++  ++ V  D  ++ G++ +T    R+P++I WA+TG EY+ ESTGVF                VI SAP+KD  + VV GVN  +YK
Sbjct:   46 MQAVPCGINGFGRIGRLVARIMIKDPETKLLQVNAGSATPDYMAYQFKYDSIHGRYQ-GDVVVDGDDLVIDGQRVITT-RARDPKDIGWAKTGVEYLCESTGVFLTAEKAQPHIDAGVKKVIFSAPAKDDSLTVVMGVNAEDYK 187          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_LACDT (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Lactarius deterrimus GN=GPD PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 1.985e-24
Identity = 60/115 (52.17%), Postives = 75/115 (65.22%), Query Frame = 3
Query:  153 VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVVGVNEHEY 497
            V+++AV+DPFI   YM YM KYDSVHG++K   +++KD K ++ G  P+TVF  R+P  I W   GA+YVVES+GVFT               VIISAPS DAPMFVVGVN   Y
Sbjct:    6 VKVLAVSDPFIDLQYMVYMFKYDSVHGRFKG-TVEIKDGKLVIDGH-PITVFQERDPANIQWGSVGADYVVESSGVFTTVDKASAHLKGGAKKVIISAPSADAPMFVVGVNLDAY 118          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ESCF3 (Glyceraldehyde-3-phosphate dehydrogenase A OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=gapA PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 3.387e-24
Identity = 59/140 (42.14%), Postives = 84/140 (60.00%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +K+GINGFGRIGR+V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-DGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 139          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PG_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, glycosomal OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.777e-24
Identity = 62/153 (40.52%), Postives = 86/153 (56.21%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVI----LQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVK-------DDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAP-SKDAPMFVVGVNEHEYKP 503
            +K+GINGFGRIGR+V + +    L  +++++VAV D      Y  Y  KYDSVHG++KH     K       DD  ++ G + + V   RNP ++PW + G EYV+ESTG+FT               V+ISAP S  A  FV+GVN + Y P
Sbjct:    3 IKVGINGFGRIGRMVFQALCDDGLLGNEIDVVAVVDMNTDARYFAYQMKYDSVHGKFKHSVSTTKSKPSVAKDDTLVVNGHRILCVKAQRNPADLPWGKLGVEYVIESTGLFTVKSAAEGHLRGGARKVVISAPASGGAKTFVMGVNHNNYNP 155          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PC_TRYBB (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Trypanosoma brucei brucei PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.777e-24
Identity = 60/143 (41.96%), Postives = 87/143 (60.84%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 506
            +++GINGFGRIGR+V R   +R+D+E+V +ND  +  DYM YM KYDS HG+++   ++V+    ++ G+K + V   R+P  + W E   + VVESTG+F                V+I+ PSK D PMFV+GVN   YK E
Sbjct:    3 IRVGINGFGRIGRVVFRAAQRRNDIEIVGIND-LLDADYMAYMLKYDSTHGRFE-GAVEVQGGALVVNGKK-IRVTSERDPANLKWNEINVDVVVESTGLFLSDDTARKHIQAGAKKVVITGPSKDDTPMFVMGVNHTTYKGE 142          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3P_MASBA3.618e-2644.59Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3P1_SYNY33.063e-2543.45Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P1_ANAVT4.000e-2542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P1_ANASP4.000e-2542.86Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Anab... [more]
G3P_BUCAI6.824e-2539.16Glyceraldehyde-3-phosphate dehydrogenase OS=Buchne... [more]
G3PA_GUITH6.824e-2543.75Glyceraldehyde-3-phosphate dehydrogenase, chloropl... [more]
G3P_LACDT1.985e-2452.17Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P1_ESCF33.387e-2442.14Glyceraldehyde-3-phosphate dehydrogenase A OS=Esch... [more]
G3PG_TRYBB5.777e-2440.52Glyceraldehyde-3-phosphate dehydrogenase, glycosom... [more]
G3PC_TRYBB5.777e-2441.96Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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