FC876224

Overview
NameFC876224
Unique NameFC876224
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length509
Libraries
Library NameType
DevOvary1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10322 contig Ccv1_Contig10322:7..515. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_CHLRE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Chlamydomonas reinhardtii GN=GAPA PE=1 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 5.237e-17
Identity = 53/147 (36.05%), Postives = 80/147 (54.42%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD--VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS--KDAPMFVVGVNEHEYKPE 506
            K+++ INGFGRIGR   R    R +  +++VA+ND        +++ KYDS  G +   ++K+ DD  +    K + +   R+P ++PW E   + V+E TGVF                V+I+AP+  KD P FVVGVNE +YK E
Sbjct:   37 KIRVAINGFGRIGRNFLRCWHGRQNTLLDVVAINDSG-GVKQASHLLKYDSTLGTFAA-DVKIVDDSHISVDGKQIKIVSSRDPLQLPWKEMNIDLVIEGTGVFIDKVGAGKHIQAGASKVLITAPAKDKDIPTFVVGVNEGDYKHE 181          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 53/146 (36.30%), Postives = 82/146 (56.16%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPMFVV-GVNEHEY 497
            V++GINGFGRIGR   R +L +      D+E+VAVND       + ++ K+DS+ G+  + ++ ++ + T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  + VV GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADIEVVAVND-ITDNSTLAHLLKFDSILGRLPY-DVSLEGEDTIVVGPAKIKALEVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITVVLGVNDDKY 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_CLOPA (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium pasteurianum GN=gap PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS-KDAPMFVVGVNEHE 494
            K+ INGFGRIGRL  R IL+   +E+VA+ND       + ++ KYDS  G++ + E++VK+   ++ G K V VF   +PE++PW E G + V+E TG FT               V+ISAP+  D    V  VN  +
Sbjct:    3 KVAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGELGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNED 137          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_CITFR (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Citrobacter freundii GN=gap PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 48/128 (37.50%), Postives = 73/128 (57.03%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEYK 500
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++ +  ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y+
Sbjct:    1 IVFRAAQERSDIEIVAIND-LLDADYMAYMLKYDSTHGRF-NGTVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGLFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKYE 125          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P3_ANASP (Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anabaena sp. (strain PCC 7120) GN=gap3 PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 6.839e-17
Identity = 47/144 (32.64%), Postives = 81/144 (56.25%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEYKPE 506
            KV++GINGFGR+GRL  R      ++E V +N+         ++ K+DSVHG+W   E++ + ++ L+ G  P++      P+++PW + G + V+E +G F                VI++AP K+  +  V+GVN++ Y+PE
Sbjct:    2 KVRVGINGFGRMGRLALRAAWDWPELEFVHINEIKGGAVAAAHLLKFDSVHGRWT-PEVEAEGERVLIDG-TPLSFSEYGKPDDVPWEDFGVDLVLECSGKFRTPATLDPYFKRGVQKVIVAAPVKEEALNIVMGVNDYLYEPE 143          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_CLOAB (Glyceraldehyde-3-phosphate dehydrogenase OS=Clostridium acetobutylicum GN=gap PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 53/138 (38.41%), Postives = 77/138 (55.80%), Query Frame = 3
Query:   84 KIGINGFGRIGRLVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPS-KDAPMFVVGVNEHE 494
            KI INGFGRIGRL  R IL+   +E+VA+ND       + ++ KYDS  G++ + E++VK+   ++ G K V VF   +PE++PW + G + V+E TG FT               V+ISAP+  D    V  VN  +
Sbjct:    3 KIAINGFGRIGRLALRRILEVPGLEVVAIND-LTDAKMLAHLFKYDSSQGRF-NGEIEVKEGAFVVNG-KEVKVFAEADPEKLPWGDLGIDVVLECTGFFTKKEKAEAHVRAGAKKVVISAPAGNDLKTIVFNVNNED 137          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3PA_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase A, chloroplastic OS=Zea mays GN=GAPA PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 53/147 (36.05%), Postives = 76/147 (51.70%), Query Frame = 3
Query:   78 KVKIGINGFGRIGRLVARVILQRDD---VELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSK-DAPMFVVGVNEHEYKPE 506
            K+K+ INGFGRIGR   R    R D   ++++A+ND        +++ KYDS  G +   ++K   D  +    K + V   RNP  +PW E G + V+E TGVF                V+I+AP K D P +VVGVN  +Y P+
Sbjct:   67 KLKVAINGFGRIGRNFLRCWHGRGDASPLDVIAINDTG-GVKQASHLLKYDSTLGIFDA-DVKPVGDNAISVDGKVIKVVSDRNPSNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPGKGDIPTYVVGVNADQYNPD 211          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P1_ESCFE (Glyceraldehyde-3-phosphate dehydrogenase A (Fragment) OS=Escherichia fergusonii GN=gapA PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 1.167e-16
Identity = 48/127 (37.80%), Postives = 71/127 (55.91%), Query Frame = 3
Query:  120 LVARVILQRDDVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRNPEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKD-APMFVVGVNEHEY 497
            +V R   +R D+E+VA+ND  +  DYM YM KYDS HG++    ++VKD   ++ G+K + V   R+P  + W E G + V E+TG+F                V+++ PSKD  PMFV G N  +Y
Sbjct:    1 IVFRAAQKRSDIEIVAIND-LLDADYMAYMLKYDSTHGRFDG-TVEVKDGHLIVNGKK-IRVTAERDPANLKWDEVGVDVVAEATGIFLTDETARKHITAGAKKVVLTGPSKDNTPMFVKGANFDKY 124          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 497
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146          
BLAST of FC876224 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.990e-16
Identity = 53/146 (36.30%), Postives = 80/146 (54.79%), Query Frame = 3
Query:   81 VKIGINGFGRIGRLVARVILQRD-----DVELVAVNDPFITTDYMTYMCKYDSVHGQWKHHELKVKDDKTLLFGEKPVTVFGVRN-PEEIPWAETGAEYVVESTGVFTXXXXXXXXXXXXXXXVIISAPSKDAPM-FVVGVNEHEY 497
            V++GINGFGRIGR   R +L +      DVE+VA ND       + ++ K+DS+ G+    ++ ++ D T++ G   +    VR  P  +PW + G + VVESTG+FT               VIISAP+ D  +  V+GVN+ +Y
Sbjct:    3 VRVGINGFGRIGRNFYRALLAQQEQGTADVEVVAAND-ITDNSTLAHLLKFDSILGRLPC-DVGLEGDDTIVVGRAKIKALAVREGPAALPWGDLGVDVVVESTGLFTNAAKAKGHLDAGAKKVIISAPATDEDITIVLGVNDDKY 146          
The following BLAST results are available for this feature:
BLAST of FC876224 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 307
Match NameE-valueIdentityDescription
G3PA_CHLRE5.237e-1736.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P_MYCAV6.839e-1736.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_CLOPA6.839e-1738.41Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3P_CITFR6.839e-1737.50Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]
G3P3_ANASP6.839e-1732.64Glyceraldehyde-3-phosphate dehydrogenase 3 OS=Anab... [more]
G3P_CLOAB1.167e-1638.41Glyceraldehyde-3-phosphate dehydrogenase OS=Clostr... [more]
G3PA_MAIZE1.167e-1636.05Glyceraldehyde-3-phosphate dehydrogenase A, chloro... [more]
G3P1_ESCFE1.167e-1637.80Glyceraldehyde-3-phosphate dehydrogenase A (Fragme... [more]
G3P_MYCTU1.990e-1636.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO1.990e-1636.30Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]

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Properties
Property NameValue
Genbank descriptionC32002A02EF DevOvary1 Citrus clementina cDNA clone C32002A02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>FC876224 ID=FC876224; Name=FC876224; organism=Citrus clementina; type=EST; length=509bp
GGACTGCTCTCTCTACTCTCTACAACTTTCTTCACCACTCTTTCACCGCT
CAATTTCATCTCTCGAGAATCATGGGGAAGGTCAAGATCGGAATCAACGG
ATTCGGAAGAATTGGTAGGCTGGTGGCAAGAGTCATCTTGCAGAGGGACG
ATGTTGAACTCGTTGCTGTTAATGATCCCTTTATCACAACCGATTACATG
ACATACATGTGTAAGTACGACAGTGTTCACGGTCAATGGAAGCACCATGA
ATTGAAGGTTAAGGACGATAAGACCCTTCTCTTTGGTGAGAAGCCTGTCA
CTGTTTTCGGTGTTAGGAACCCAGAGGAGATCCCATGGGCTGAGACTGGA
GCCGAGTATGTTGTGGAGTCGACTGGAGTCTTTACAGACAAGGATAAGGC
TGCTGCCCATTTGAAGGGTGGTGCTAAGAAAGTTATCATCTCAGCCCCCA
GCAAGGATGCTCCTATGTTTGTTGTGGGTGTCAATGAGCACGAGTACAAA
CCAGAGCTC
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